Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03528 ATGAAGAAGATTATAACTCAAAGTTTAGAGGCTAATGTAATGTatgagCTGCTTTACCGTCGGTGGTGTATCGGAATCAAGTCGGAGTCGTACTCAACTCAATTTTCCCAGAAAACGCCGCCGCTCTTCTTCGTCTCCGGCCACCACAAACACTCACAAACTCTTCCagCAATGGGAAAGATGTACAAGAAGAAACAAGATGAGAAACATGGACCGCGAAAAGAACATACAAATAAACTGGAAGACGAAATGGACATAAGGAAGATTATGAAAGACGTTGAAAACTTTAACAACTCACATATGTCATGGAAAGAACGCAAAAAGATTGAAGATAGGAAGGTTGTTTCACTTGGTGGGAAGCCCCTCAAGAATCAAAGATTACCTTTAAGTGTGGCGCGGCCAATGATGAAGAAACAAAAGCAAAGAGAGGAAGCTATGCTCCAAGAGCGTATGATTCTAGGACGATTTGGGGGAAAGATTGGTGCTAGCAGTAGTAGCAGTAAAAAACCAGTTGGAAAACACAAACCTGAGGACAGGGGTTTGAAATTAAGCGAAGGTCGATTTAGAAATGGCATACTTGATGTGAAGCATTTGTTGAAGTCAACACCCACAGGAGGTCATGATGCCGGAAAAAACATGTCCAATAAAGGGAAAAGACAAGGAGGCAactttaaaaatgataaaagggGTGGCGGCCTAAATCGTTGCGGGAAGAGTTGTCGTCTAAGATGGTTAAACTATCTTAGGCCTCATATCAAGCTTGGAGGTTTCACTGAGGAAGAAGACAACATTATCTTTGCTCTTTATAGCACCATAGGAAGCAGGTGGTCCTTAATAGCAGCTCAATTACCAGGAAGAACAGATAATGATGTGAAGAATCATTGGAACACTAAACTAAAGAAAAGGTTTTTGGCACAAAACTCATCCACAAGCAACAATATTTACACTTTCAGCAACACTACTAGTACTGCCACTACAAGTTCTGACCACTTTTCAAGTACTTTGACTTTTCAACCTCATGTTGACCAAACCTTTGTCTTTGATCAAAAACATAACACAACTTGTTTTGACTCCTACAATGTTCTGGATTTGGATCaaacaacaattaataatattcaTTTACCAATGAAAATGGAATCAGAAGCTTTTTATACTGGAAACAGCTTAAGTAGTAGCTGTAGTACTACACCAACCACCAAGGAAATTTCAAGTGCACCTTTCttagaacaacaacaaaacaatcaTAATCAATGGTTTGGATATGACCATGATGATGCAATTCTACATGAATTTGTTCTTGATGATTTTTTGAATCATGGACCCTCATCTGGCTAA 1335 0.3783 MKKIITQSLEANVMYELLYRRWCIGIKSESYSTQFSQKTPPLFFVSGHHKHSQTLPAMGKMYKKKQDEKHGPRKEHTNKLEDEMDIRKIMKDVENFNNSHMSWKERKKIEDRKVVSLGGKPLKNQRLPLSVARPMMKKQKQREEAMLQERMILGRFGGKIGASSSSSKKPVGKHKPEDRGLKLSEGRFRNGILDVKHLLKSTPTGGHDAGKNMSNKGKRQGGNFKNDKRGGGLNRCGKSCRLRWLNYLRPHIKLGGFTEEEDNIIFALYSTIGSRWSLIAAQLPGRTDNDVKNHWNTKLKKRFLAQNSSTSNNIYTFSNTTSTATTSSDHFSSTLTFQPHVDQTFVFDQKHNTTCFDSYNVLDLDQTTINNIHLPMKMESEAFYTGNSLSSSCSTTPTTKEISSAPFLEQQQNNHNQWFGYDHDDAILHEFVLDDFLNHGPSSG 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03528 444 SUPERFAMILY Homeodomain-like 234 307 IPR009057 -
Tsu03g03528 444 Pfam Domain of unknown function (DUF4602) 46 160 IPR027973 -
Tsu03g03528 444 MobiDBLite consensus disorder prediction 158 183 - -
Tsu03g03528 444 CDD SANT 257 299 IPR001005 -
Tsu03g03528 444 Gene3D - 211 253 - -
Tsu03g03528 444 ProSiteProfiles Myb-like domain profile. 249 299 IPR001005 -
Tsu03g03528 444 Gene3D - 256 327 - -
Tsu03g03528 444 PANTHER OS09G0431300 PROTEIN 221 401 - -
Tsu03g03528 444 SMART sant 253 301 IPR001005 -
Tsu03g03528 444 MobiDBLite consensus disorder prediction 199 230 - -
Tsu03g03528 444 Pfam Myb-like DNA-binding domain 257 297 IPR001005 -
Tsu03g03528 444 PANTHER OS09G0431300 PROTEIN 221 401 - -
Tsu03g03528 444 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 249 303 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03528 Tsu-Chr3 48460402 48468511 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03528 221 304 MYB Transcription Factor Family AT5G65790 75.000 2.50e-38 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu03g03528 DUF4602 4.6e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03528 - - cam:101498541 258.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03528 03 48460402 48468511 Tsu03g03528 03 48460402 48468511 ECH