Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03523 ATGATGATCGGAGAACACCATCGTTCAAATCCAACGGTTCATATTCCTCCATGGCCAAATCACGATGATCCAACGTCTGAAATTTACTCCTCTTATTTCCCCGATGATAGCAATGCCGGCGCCGGAGATTACTCTCCGTACTATCTCCGTGAAGCAATGGCGGCGCTACAGCGTTATCTACCGTCAAACGAGTTCGACGCTGTTGATGGCGATTCTGATTCAGAATCTCCGGCGGATTCTCCGGTGGACGCTTTTACATGCGATCATTTTCGTATGTACGAGTTCAAGATAAGAAGATGCGCACGTGGAAGATCACATGACTGGACGGAGTGTCCGTACGCACATCCCGGAGAAAAAGCACGCCGCCGTGATCCAAGAAAGTTTCATTACTCCGGTACGGCGTGTCCTGATTTTCGTAAAGGAAACTGTAAAAAAGGTGACGCGTGTGAATACGCGCACGGTGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGTACTCAGCCATGCAAAGACGGTACTAGCTGTCGCCGTCGTGTTTGTTTTTTCGCTCACACGCCGGAACAGATCCGTCTCAATGTTAACAGTCCACCACCACGTAGTCTTAACTCACCGGATTCATACGACGGTTCTCCGTTACGACAAATGGTGTTACCGTTACCGTTCATGTCTTCTCCTGTTTCGACAACTCCACCGGAGTCACCGTCACCGCCGATGTCTCCGATGGCTCAGTCGCTAAGTAAATCACTCGGCTCGAGTTCGATCAATGagatggtggcttctttgagaAATCTTCAGCTTGGAAAATTGAAATCTATACCTTCTATGCCGGTTAATAGAAACATTTCAATCGGGTCGGGTTACGGATCACCTAGAGGTTCTGTGCTTCGACCCGGTTTTTGCAGTCTTCCAACAACACCGACTCAAGTTACTGGACCGGGTTCAGGTCGGGTTGGATATTTGGATCTTTGGGATCAGAGTTGTGAGGAGGAACCTATGATGGAGAGAGTTGAATCTGGGAGAGATATAAGGGCTAAGATGTTTGAGAAATTAAGCAAagaaaattcattgaaaaattcgGATTCTGGTCAACCCGATGGAGCTCCAGATGTTGGGTGGATAACTGATTTGGTGAATTGA 1140 0.4649 MMIGEHHRSNPTVHIPPWPNHDDPTSEIYSSYFPDDSNAGAGDYSPYYLREAMAALQRYLPSNEFDAVDGDSDSESPADSPVDAFTCDHFRMYEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQIRLNVNSPPPRSLNSPDSYDGSPLRQMVLPLPFMSSPVSTTPPESPSPPMSPMAQSLSKSLGSSSINEMVASLRNLQLGKLKSIPSMPVNRNISIGSGYGSPRGSVLRPGFCSLPTTPTQVTGPGSGRVGYLDLWDQSCEEEPMMERVESGRDIRAKMFEKLSKENSLKNSDSGQPDGAPDVGWITDLVN 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03523 379 MobiDBLite consensus disorder prediction 354 379 - -
Tsu03g03523 379 Gene3D - 129 192 - -
Tsu03g03523 379 PANTHER UNKEMPT FAMILY MEMBER 7 379 IPR045234 -
Tsu03g03523 379 MobiDBLite consensus disorder prediction 1 21 - -
Tsu03g03523 379 MobiDBLite consensus disorder prediction 222 247 - -
Tsu03g03523 379 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 7 379 - -
Tsu03g03523 379 SMART c3hfinal6 129 155 IPR000571 GO:0046872
Tsu03g03523 379 SMART c3hfinal6 164 187 IPR000571 GO:0046872
Tsu03g03523 379 MobiDBLite consensus disorder prediction 225 239 - -
Tsu03g03523 379 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 134 154 IPR000571 GO:0046872
Tsu03g03523 379 ProSiteProfiles Zinc finger C3H1-type profile. 130 156 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03523 Tsu-Chr3 48412875 48414428 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03523 85 236 C2H2 Transcription Factor Family AT5G12850 57.862 3.20e-56 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu03g03523 zf-CCCH 1.4e-05 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03523 - - aprc:113867365 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03523 03 48412875 48414428 Tsu03g03523 03 48412875 48414428 ECH