Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu03g03523 | ATGATGATCGGAGAACACCATCGTTCAAATCCAACGGTTCATATTCCTCCATGGCCAAATCACGATGATCCAACGTCTGAAATTTACTCCTCTTATTTCCCCGATGATAGCAATGCCGGCGCCGGAGATTACTCTCCGTACTATCTCCGTGAAGCAATGGCGGCGCTACAGCGTTATCTACCGTCAAACGAGTTCGACGCTGTTGATGGCGATTCTGATTCAGAATCTCCGGCGGATTCTCCGGTGGACGCTTTTACATGCGATCATTTTCGTATGTACGAGTTCAAGATAAGAAGATGCGCACGTGGAAGATCACATGACTGGACGGAGTGTCCGTACGCACATCCCGGAGAAAAAGCACGCCGCCGTGATCCAAGAAAGTTTCATTACTCCGGTACGGCGTGTCCTGATTTTCGTAAAGGAAACTGTAAAAAAGGTGACGCGTGTGAATACGCGCACGGTGTTTTCGAGTGTTGGCTTCATCCAGCTCGTTACCGTACTCAGCCATGCAAAGACGGTACTAGCTGTCGCCGTCGTGTTTGTTTTTTCGCTCACACGCCGGAACAGATCCGTCTCAATGTTAACAGTCCACCACCACGTAGTCTTAACTCACCGGATTCATACGACGGTTCTCCGTTACGACAAATGGTGTTACCGTTACCGTTCATGTCTTCTCCTGTTTCGACAACTCCACCGGAGTCACCGTCACCGCCGATGTCTCCGATGGCTCAGTCGCTAAGTAAATCACTCGGCTCGAGTTCGATCAATGagatggtggcttctttgagaAATCTTCAGCTTGGAAAATTGAAATCTATACCTTCTATGCCGGTTAATAGAAACATTTCAATCGGGTCGGGTTACGGATCACCTAGAGGTTCTGTGCTTCGACCCGGTTTTTGCAGTCTTCCAACAACACCGACTCAAGTTACTGGACCGGGTTCAGGTCGGGTTGGATATTTGGATCTTTGGGATCAGAGTTGTGAGGAGGAACCTATGATGGAGAGAGTTGAATCTGGGAGAGATATAAGGGCTAAGATGTTTGAGAAATTAAGCAAagaaaattcattgaaaaattcgGATTCTGGTCAACCCGATGGAGCTCCAGATGTTGGGTGGATAACTGATTTGGTGAATTGA | 1140 | 0.4649 | MMIGEHHRSNPTVHIPPWPNHDDPTSEIYSSYFPDDSNAGAGDYSPYYLREAMAALQRYLPSNEFDAVDGDSDSESPADSPVDAFTCDHFRMYEFKIRRCARGRSHDWTECPYAHPGEKARRRDPRKFHYSGTACPDFRKGNCKKGDACEYAHGVFECWLHPARYRTQPCKDGTSCRRRVCFFAHTPEQIRLNVNSPPPRSLNSPDSYDGSPLRQMVLPLPFMSSPVSTTPPESPSPPMSPMAQSLSKSLGSSSINEMVASLRNLQLGKLKSIPSMPVNRNISIGSGYGSPRGSVLRPGFCSLPTTPTQVTGPGSGRVGYLDLWDQSCEEEPMMERVESGRDIRAKMFEKLSKENSLKNSDSGQPDGAPDVGWITDLVN | 379 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu03g03523 | 379 | MobiDBLite | consensus disorder prediction | 354 | 379 | - | - | |
Tsu03g03523 | 379 | Gene3D | - | 129 | 192 | - | - | |
Tsu03g03523 | 379 | PANTHER | UNKEMPT FAMILY MEMBER | 7 | 379 | IPR045234 | - | |
Tsu03g03523 | 379 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Tsu03g03523 | 379 | MobiDBLite | consensus disorder prediction | 222 | 247 | - | - | |
Tsu03g03523 | 379 | PANTHER | ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 20 | 7 | 379 | - | - | |
Tsu03g03523 | 379 | SMART | c3hfinal6 | 129 | 155 | IPR000571 | GO:0046872 | |
Tsu03g03523 | 379 | SMART | c3hfinal6 | 164 | 187 | IPR000571 | GO:0046872 | |
Tsu03g03523 | 379 | MobiDBLite | consensus disorder prediction | 225 | 239 | - | - | |
Tsu03g03523 | 379 | Pfam | Zinc finger C-x8-C-x5-C-x3-H type (and similar) | 134 | 154 | IPR000571 | GO:0046872 | |
Tsu03g03523 | 379 | ProSiteProfiles | Zinc finger C3H1-type profile. | 130 | 156 | IPR000571 | GO:0046872 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu03g03523 | Tsu-Chr3 | 48412875 | 48414428 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu03g03523 | 85 | 236 | C2H2 Transcription Factor Family | AT5G12850 | 57.862 | 3.20e-56 | 194 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C3H | Tsu03g03523 | zf-CCCH | 1.4e-05 | CL0537 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu03g03523 | - | - | aprc:113867365 | 578.941 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu03g03523 | 03 | 48412875 | 48414428 | Tsu03g03523 | 03 | 48412875 | 48414428 | ECH |