Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03508 ATGGTGGCGGCAGcagcatcatcatcatatgaagaaagtCGCCGGAAAAGAatggaagaaaacaaaaagagaatGGAAGCTCTCAATCTTCATAAACTTTCTCAATCCCTTAAcaaatcatcatcttcctccATTTCAAAACCATCCCCTTCCAAACCTCGCACTATTCACAAAGAACTCGTTGTTGTCCGACGCTCCGGCCGTGTCGCCAACTTGCCTGCTCCCATTTACAAAGAAGTTCTTGTTGATCGTGTCATAATACCTAGAAATCGAATTTCAAGAGGAGGTTACGATAAGTACAGGGATTATTCGAAGCGAGTGTATGCTTCCGATGAAGCTAGAGAGGAAGCATTGGAGAAAGCGGAAAAGTTGCAATCCGATTTAGATTCTGATCATCCGATTTTTATTAAGTCAATGCTTCAATCTCATGTCACTGGTGGTTTCTGGCTGGGCCTTCCAGTTCATTTCTGCAAGAAACACCTTCCAAAACGGGACGAAGCGATGACTTTGATTGATGAGGATGGGGAGGAGTATCCAACTACATATTTGGCTCATAAAACAGGACTTAGTGCTGGATGGAGAGGATTTGCTATTGCTCATAACCTTGTTGACGGGGACgctttaatttttgaattagTTAAACGCACTGCATTCAAGGTGTACATTATTAGAGTGAATGGTCCTTCGGAGGGTAAACAATTCGAagccataACCGATCCCACTTCCGCCATAACcattttctgttattttttttcGGCGACAACGCCGCCGCGTATTGCACCACCCGATCCTTCCATTGATCACGCTTCTCCATTCTACGTTCATCCTGGAGATGGACCTTCATCTGTTACGGTTTCACCTCTTCTCACAGAATCGAATTATCACTCATGGTCTCGTGCGGTGAAGAGAGCTCTTGGCGCAAAGATGAAGTTTGATTTTGTGGACGATTCTCTTCCTCCGCCGGTTGATGCGTTTGATCCTTCATTTCTTGATATTTGGAATGATCTACGTGAACGTTTCTCGCAAGGTGATTTGATTAGCATCTCTGAATTACAACGCGATATCTATGATCTGAAGCAAGAAAATCGTTATGTCACTGAATTTTACTCTGAATTGAAGCTTCTTTGGGAGGAACTTGAGCTATATCTTCCAATTCCAACGTGCACATGTCGTGTTCGATGCAATTGTGAAGCTATGCGTGCTGCTCGTAataatcatcttcttcttcatacaATTCGTTTTTTGACTGGTCTTAATGACAATTTCTCTGTGATTTCTATCAATGCTGCTAAGTTTGGAAACCTTCTAGCTCCAAATCTTCCTCTCGAGGTTGTTCTTATTGTGATTTCTATCAATGCTGCTAAGTTTGGAAAACCTTCTAGCTCCAAATCTTCCTCTCGAGGTTGTTCTTATTGTGGTAAGGATAATCATGTGGTTGAAAACTGCTTCAAGAAATATGGAGTACCTCCACACATGAAGAAGTCTTCTTATGTGAATGTTGTAGCTGAGGGAGGCAACACTGGTTCATCTACAACATCTACAACACCTGCTCCTTCAATCTCTCAAGATCAGTATGATAGGTTAATGTCAATCCTTCAGAATTCAAATCTTGGATCCAATACTGCTGCAAGCTCAAACCAGGTTGGTTCATCCATGAATTCTTATCATACATCAGGAATTCACAAAGGTATAAGTTCTCATTCATATACTACATGTGCTCTTAGCACTTGGATAATAGATTCTGGTGCTAGCCATCATATATGTAGTTCTTTAAATTGGTTTCAATCATACATTGAAATCAATCCTATAAACATCAAATTGCCTAATGGAGCTTTTGCAATTGCAAAATACTCTGGAACTGTTGGTTTTTCTTCATCATTTACTATTACAAATGTCTTGTATGTGCCAAATTTTTCTGTTAATTTGATTGCAGTTTCTAAATTGTGTCATTCACACAATTATCTAATACAATTCACTGGTTCAAAATGTCTTATTCAGGACCAGAAGAATTTGAGGATGATTGGTTCAACTGATGAACATGAAGGATTGTATCACTTGAATCTCACAGATAGAATTGCACATATAGCTGCTATTGATGGCACAAATTTCCCTACCATACCTCAATCTGCCATTTGGCATTTCAGACTAGGACACCCTTCCCATAGTAGACTAGTTAGCTTGCAATCCAAGTTTCCTTATGTAACATTTGATCAACATGGAATTTGTGATATTTGTTACTTTGCTAGACATAAGAAACTTCCCTATAAGAGTAGTTTTAATAAAGCATCACATACTTATGATGTAATTCCCTTTGACATTTGGGGTCCTATATCAATAAAATCTATTCATGGCCATTCATATTTTCTTACTGCCATTGATGATTATAGCAGAACAAAACTGTCACCTAGAGgaagaaaatgtgttttcttaGGGTACAAGCAAGGTGTCAAAGACACAATTCTATTTGATCTGAGTGAAAAGAACATATTCATTTCCAGAAATGTCATACATCATGATCATATTCTCCCATACTTAGACACATCCACCAAAACTAACTGGCATTAccattcaaattttgattttgaccaTGAACCAAATTCATATACTGATGCTTCACCTGTTCAAAATGAACCTGACATTGCCATACCAGATGAACTTGACACACCATTCATCCCTAATGAACATAACACCAGCACTCCTCCACAACCTAACCATCATACTACCTCTAATACACATGAACCACCCATTTCTGATAATCACAGAGAACCTGACCAACCACTCTCTAGACCTCAAAGAGCAATACATAAGCCATCATATCTGTCAGATTATGTGTGCACATCTTCAAAGACATCAGCTGCTTCATCATCCACAGGTTCTATCTATCTCATTTCTTTTTATCACTCTTTAGAAAATTTATCTAGTACTCATAGTGTCTTCACATTGTCTCTCACACAACACACTGAACCTAAGACCTATGCTGAAGCTTGTAAGTCAGACCATTGGATACATGCTATGAACTCTGAACTTGAGGCATTATCTAGAACTGGTACTTGGAAGATTGTTGACATGCCTCCTAATATCAAGCCTATAGGATgcaaatgggtgtataaaatCAAGCACAAGTCTGATGGAAGTATAGAGAGATATAAGGCCAGACTTGTTGCTAAAGGCTATAATCAAATTGAAGGACTTGATTTTTTTGATACCTTATCACCAGTTGCTAAGCTTACCACTGTGAGGACTTTGCTTGCTATTACATCTATCAAAGAAGTAGCACACTCAAAAGAAGGTATTCGTGTATCTCAGAGAAAGTATTGCTTGGATTTACTCAATGATTCTGGTCTGCTTGGATCTAAACCAGCCTCCACTCCCTTGGATCCATCTATAAAACTACATAATGATAATGGAAAACCTTTTGAGGATATTAGTCTATACAGAAGACTTGTTGGAAAGTTGTTATATCTAACAAAAACACAAGATACAAGAAGATCTACTTCAGGCTATTGTTTCTTTTTGGGATCATCATTAATCTCATGGAAAGCAAAGAAGCAATTAACCATATCAAAATCTTCTTCTGAAGCTGAGTATAGAGCTCTGTCATCCTCTACATGTGAACTGATTTGGCTACTATATCTTTTGAAGGACCTACAGATTGAATGTACACAGCTACCGATTATCTTCTGTGATAATCAAAGTGCCTTGCATATTGCCTCAAATCCAGTCTTCCATGAGAGAACAAAGCACATTGAAATAGACTGCCACTTGGTCAGGGAAAAGGTTCAAGCAGGATTGCTAAGACTTTTGCCTGTCTCTACACAGGACCAACTTGCTGATTGCCTAACAAAGGCTTTGCCAACAGCCAAATTCAATCATTTCATAGCCAAGCATGGATTGCTTGACATATATCAAGCATCAGCTTGTGGGAGGCTGTTAAATAACAAAATAGCTTCTTCCCCAAGTAACAATTATGAAGAAGCTTCTCTAGCAAGTAATGATCAAGTGAAGAGTGTAActacttgtaacaaactctcaaCAATATGTAACTAA 4047 0.3697 MVAAAASSSYEESRRKRMEENKKRMEALNLHKLSQSLNKSSSSSISKPSPSKPRTIHKELVVVRRSGRVANLPAPIYKEVLVDRVIIPRNRISRGGYDKYRDYSKRVYASDEAREEALEKAEKLQSDLDSDHPIFIKSMLQSHVTGGFWLGLPVHFCKKHLPKRDEAMTLIDEDGEEYPTTYLAHKTGLSAGWRGFAIAHNLVDGDALIFELVKRTAFKVYIIRVNGPSEGKQFEAITDPTSAITIFCYFFSATTPPRIAPPDPSIDHASPFYVHPGDGPSSVTVSPLLTESNYHSWSRAVKRALGAKMKFDFVDDSLPPPVDAFDPSFLDIWNDLRERFSQGDLISISELQRDIYDLKQENRYVTEFYSELKLLWEELELYLPIPTCTCRVRCNCEAMRAARNNHLLLHTIRFLTGLNDNFSVISINAAKFGNLLAPNLPLEVVLIVISINAAKFGKPSSSKSSSRGCSYCGKDNHVVENCFKKYGVPPHMKKSSYVNVVAEGGNTGSSTTSTTPAPSISQDQYDRLMSILQNSNLGSNTAASSNQVGSSMNSYHTSGIHKGISSHSYTTCALSTWIIDSGASHHICSSLNWFQSYIEINPINIKLPNGAFAIAKYSGTVGFSSSFTITNVLYVPNFSVNLIAVSKLCHSHNYLIQFTGSKCLIQDQKNLRMIGSTDEHEGLYHLNLTDRIAHIAAIDGTNFPTIPQSAIWHFRLGHPSHSRLVSLQSKFPYVTFDQHGICDICYFARHKKLPYKSSFNKASHTYDVIPFDIWGPISIKSIHGHSYFLTAIDDYSRTKLSPRGRKCVFLGYKQGVKDTILFDLSEKNIFISRNVIHHDHILPYLDTSTKTNWHYHSNFDFDHEPNSYTDASPVQNEPDIAIPDELDTPFIPNEHNTSTPPQPNHHTTSNTHEPPISDNHREPDQPLSRPQRAIHKPSYLSDYVCTSSKTSAASSSTGSIYLISFYHSLENLSSTHSVFTLSLTQHTEPKTYAEACKSDHWIHAMNSELEALSRTGTWKIVDMPPNIKPIGCKWVYKIKHKSDGSIERYKARLVAKGYNQIEGLDFFDTLSPVAKLTTVRTLLAITSIKEVAHSKEGIRVSQRKYCLDLLNDSGLLGSKPASTPLDPSIKLHNDNGKPFEDISLYRRLVGKLLYLTKTQDTRRSTSGYCFFLGSSLISWKAKKQLTISKSSSEAEYRALSSSTCELIWLLYLLKDLQIECTQLPIIFCDNQSALHIASNPVFHERTKHIEIDCHLVREKVQAGLLRLLPVSTQDQLADCLTKALPTAKFNHFIAKHGLLDIYQASACGRLLNNKIASSPSNNYEEASLASNDQVKSVTTCNKLSTICN 1348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03508 1348 SUPERFAMILY DNA-binding pseudobarrel domain 128 226 IPR015300 -
Tsu03g03508 1348 SUPERFAMILY DNA/RNA polymerases 1016 1255 IPR043502 -
Tsu03g03508 1348 PANTHER B3 DOMAIN-CONTAINING PROTEIN 7 231 - -
Tsu03g03508 1348 Pfam GAG-pre-integrase domain 682 750 IPR025724 -
Tsu03g03508 1348 MobiDBLite consensus disorder prediction 31 51 - -
Tsu03g03508 1348 MobiDBLite consensus disorder prediction 891 914 - -
Tsu03g03508 1348 CDD B3_DNA 133 224 IPR003340 GO:0003677
Tsu03g03508 1348 Pfam B3 DNA binding domain 135 224 IPR003340 GO:0003677
Tsu03g03508 1348 SMART B3_2 135 226 IPR003340 GO:0003677
Tsu03g03508 1348 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1017 1090 IPR013103 -
Tsu03g03508 1348 MobiDBLite consensus disorder prediction 915 929 - -
Tsu03g03508 1348 MobiDBLite consensus disorder prediction 1 53 - -
Tsu03g03508 1348 MobiDBLite consensus disorder prediction 864 933 - -
Tsu03g03508 1348 CDD RNase_HI_RT_Ty1 1160 1286 - -
Tsu03g03508 1348 ProSiteProfiles B3 DNA-binding domain profile. 135 226 IPR003340 GO:0003677
Tsu03g03508 1348 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 7 231 IPR044837 -
Tsu03g03508 1348 MobiDBLite consensus disorder prediction 10 29 - -
Tsu03g03508 1348 Pfam Retrotransposon gag protein 330 380 IPR005162 -
Tsu03g03508 1348 Pfam gag-polypeptide of LTR copia-type 275 321 IPR029472 -
Tsu03g03508 1348 Gene3D - 109 227 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03508 Tsu-Chr3 48183442 48194982 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03508 9 226 B3 DNA Binding Superfamily AT3G19184 59.729 3.48e-68 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Tsu03g03508 RVT_2 1.3e-19 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03508 - - vra:106780319 344.354