Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03496 ATGAAGAATCAAAATAGCTTAATTCTAGCTTTTCTCTTTCTCATTCTCCATTTTACTACAACAAAAGCTTCTTTTGGTGTTGGTGTAGGTGTTGGGGGTGGAGTTGTTTGGATAGGGGGTGGAAATAACAACAATAACCAAAACCCAAAATCCTATGAATCTCCAACATCAAAAATGGATTCAGCTTATTCAGTTCTACAAGCATGGAAATCATCAATCACTGATGACCCTTTAAAGATTCTAGATTCTTGGGTTGGTTCAAATGTTTGTTCATACAAAGGAATTTTCTGTGCAAATCCTGAAAATGGAATAGCTTCTACAACAGCTTCTGCTTCAGTAGTTGTTGTAGCAATAGATCTAAACCATGCAAATCTTCAAGGAACATTTGTAAAAGAACTGTCTTTACTCACTGACATGACACTTCTTCATCTCAACAGTAACAGATTCAGTGGAACAGTTCCTGAAACATTCAAAGATCTTGTTTCTCTTCAAGAGTTAGATTTAAGTAGTAATCAACTTTCAGGTTCTTTTCCTACGGTTACTTTATATATGCCAAGCCTCATTTACTTGGATATAAGATTCAACTTATTCTCAGGTTCATTACCTCAAGAGCTTTTCAACAAGAATCTTGATGCTATATTTCTCAACAATAATCAATTTGAAGGTGAAATTCCTACAAATTTAGGTAACTCACCTGCTTCTGTGATCAACTTAGCTAACAACAAATTGAGTGGAAATATTCCAGCTAGTTTTGGTTTCATGGGATCAAAGATAAAAGAGATTCTGTTTCTGAATAATCAGTTAACTGGTTGTATACCAGAAGGAGTTGGACTTTTTACTGAAATGGAAGTTCTTGATGTGAGTTTCAATTCATTGATGGGTCATTTGCCTGATACATTATCTTGTTTACAGAATATTGAAGTGCTTAATTTGGCTCATAATCAGCTTTCTGGAGAATTATCTGATATAATCTGTTCTTTGAGAAGTTTGGCTAATTTAACTGTTGCTTATAATTTCTTTTCTGGGTTTAGTCAACAATGCTCAAAGCTGAATTTTAGGAAtgttggttttgatttttcacTTAATTGTATTCCTGGGAGGATCATGCAGAGACCTGAACCTGAGTGTTCTATGATCCCAGGTGGAAGCTTAAGTTGTCTCAGAATTCCAACACCTAAACCTCTTGTTTGTGGTTCTATGTATGTAAGTGCTTCTAAGAACACTGATTCCACTTCACAATCACATTCTCCTTGA 1254 0.3453 MKNQNSLILAFLFLILHFTTTKASFGVGVGVGGGVVWIGGGNNNNNQNPKSYESPTSKMDSAYSVLQAWKSSITDDPLKILDSWVGSNVCSYKGIFCANPENGIASTTASASVVVVAIDLNHANLQGTFVKELSLLTDMTLLHLNSNRFSGTVPETFKDLVSLQELDLSSNQLSGSFPTVTLYMPSLIYLDIRFNLFSGSLPQELFNKNLDAIFLNNNQFEGEIPTNLGNSPASVINLANNKLSGNIPASFGFMGSKIKEILFLNNQLTGCIPEGVGLFTEMEVLDVSFNSLMGHLPDTLSCLQNIEVLNLAHNQLSGELSDIICSLRSLANLTVAYNFFSGFSQQCSKLNFRNVGFDFSLNCIPGRIMQRPEPECSMIPGGSLSCLRIPTPKPLVCGSMYVSASKNTDSTSQSHSP 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03496 417 Pfam Leucine rich repeat 140 196 IPR001611 GO:0005515
Tsu03g03496 417 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 3 414 - -
Tsu03g03496 417 Gene3D Ribonuclease Inhibitor 232 357 IPR032675 -
Tsu03g03496 417 Gene3D Ribonuclease Inhibitor 60 231 IPR032675 -
Tsu03g03496 417 PRINTS Leucine-rich repeat signature 303 316 - -
Tsu03g03496 417 PRINTS Leucine-rich repeat signature 163 176 - -
Tsu03g03496 417 SUPERFAMILY L domain-like 63 350 - -
Tsu03g03496 417 PANTHER LRR/EXTENSIN 3 414 - -
Tsu03g03496 417 Pfam Leucine rich repeat N-terminal domain 61 97 IPR013210 -
Tsu03g03496 417 SMART LRR_typ_2 279 302 IPR003591 -
Tsu03g03496 417 SMART LRR_typ_2 303 327 IPR003591 -
Tsu03g03496 417 SMART LRR_typ_2 160 183 IPR003591 -
Tsu03g03496 417 SMART LRR_typ_2 136 159 IPR003591 -
Tsu03g03496 417 SMART LRR_typ_2 184 208 IPR003591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03496 Tsu-Chr3 48038803 48040508 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03496 52 388 Leucine-rich Repeat extension Gene Families AT3G24480 47.813 1.56e-102 311
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03496 - - gsj:114407518 604.364
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03496 03 48038803 48040508 Tsu03g03496 03 48038803 48040508 ECH