Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03478 ATGGATGAATCACAGAAGTATGGACTTAATGCTGTACACAATAAATTTGTTTCTATATTGTTAGAGGAAGAAAATCTTCATCCTGATGCACCCTATTTAGAAGCTCCTTTCTCTCTGAGAAGGATTGCACGTAAAAAAGTTTTCATTGTGTTGGATAACGTGGAAACCGTAGAGCAAATAGAAGATCTTATCCTTAAAATTGACGGGCTTACATGCAATGTGTACTTTCCCAATGGTCTTGAGTGGCTTTCTGATAAACTGAGGTACCTTACATGGGATGGATACTGCCTCGAGTCTTTGCCATCAATCTTTTGTGCTGAAAAGCTTGTAAAGCTTGACATGCCTAATAGCAAGCTTAAAAAGCTATGGGATGGAGTTCAGAATTTTGTGAATTTAAAGTTCATTACGCTTGAATTTAAACATTCATTCAAAATCTCTCCGTGA 444 0.3694 MDESQKYGLNAVHNKFVSILLEEENLHPDAPYLEAPFSLRRIARKKVFIVLDNVETVEQIEDLILKIDGLTCNVYFPNGLEWLSDKLRYLTWDGYCLESLPSIFCAEKLVKLDMPNSKLKKLWDGVQNFVNLKFITLEFKHSFKISP 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03478 147 Pfam Leucine Rich Repeat 108 127 IPR011713 -
Tsu03g03478 147 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1 70 - -
Tsu03g03478 147 SUPERFAMILY L domain-like 81 139 - -
Tsu03g03478 147 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 77 131 IPR044974 GO:0006952
Tsu03g03478 147 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 70 IPR044974 GO:0006952
Tsu03g03478 147 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 77 131 - -
Tsu03g03478 147 Gene3D Ribonuclease Inhibitor 39 146 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03478 Tsu-Chr3 47905765 47906473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03478 73 125 WRKY Transcription Factor Family AT4G12020 54.717 2.66e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03478 - - mtr:MTR_3g058790 116.701