Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03463 ATGACAATATTAGCCACATCTCATATCAACTTTTCACTTTACTTTCATATATCCCTTTTTCTAATTTTGAGCCATGCAAATTCTCAGTCTCAACAAGAACACTTAatcttattaaaattaaagctTCACCTACAAAATCCATCTTTTCTTAATCATTGGAACTCATCAAACACCTCTCATTGTTCTTGGCCAAAAATCATATGCACCAAAGGTTCTGTCACAGGGTTGACTTTGGTCAACTCCAACATAACTCAAACTATACCTTCTTTCATATGTGACCTTAAAAACCTCACACATGTTGACTTCAGCAAGAATTTCATTCCTGGTGAGTTTCCAAAATCTCTATTTAAATGTTCCAAGCTTGAGTATCTTGATTTGTCAATGAATAACTTTGTTGGCAAGATTCCTTATGACATTCAAACTTTGGTTAATTTGCAATATCTCAACCTTGGTTCAACCTATTTCAGTGGTGATATTCCTTCTAGTATTGGAAAGCTTAAGGATTTGAGATTCCTTTACCTTCAATATAGTTCATTTAATGGCACTTTCCCTGATGAAATTGGTAACTTGTTCAATCTTGAGTTCTTGGATATGTcctctaattattttttacctcCTTTGAAGCTTCCATTAAGCATAATCaagttgaaaaaattgaaagttttttACATGTATGGTTCAAATTTAGTAGGGGAAATTCCTGAGGCTATTGGTGAAATGGTTTCATTGGAGAATTTGGATTTGTCAGTAAATAATTTAAGTGGAAAAATTCCTAGTGGTTTGTTCATGCTAAAGAATTTGAGCATAGTATATCTTGATAGAAATAGTCTCTTTGGAGAGATACCAAGTGTGGTTGAAGCATTGAATTTGGTTGAACTTGATGTTGCAGAGAATAATCTTACAGGAAAAATACCAAATGATTTTGGAAAGTTGATAAAGTTAACATGTTTGAATTTGTTCATGAACAAGTTTTTAGGAGAGATTCCACAAAGCATAGGAAAACTTCCATCTTTAAAAGGTTTTAGTATCTTTAAGAACAAGTTTTCAGGTACAATTCCTTCTGATTTTGGACTTTACTCAAAGCTTGAATATTTTGATATAGCAATGAACAATTTTAAGGGAAGGTTACCATATAATTTGTGTTATCATGGTAAGTTACAAAACTTAACTGTTTATGAAAATCATTTAAGTGGTGAGTTACCAAAATCACTTGGAAATTGTAGTAGCTTATTGGAGGTGAAAATTTATAACAATGAGTTCTATGGTAAAATTCCTGGTGGTCTTTGGAGAGCtgaaaatttgttgtttttcatgGTAAGCCATAACAAGTTTATTGGTGAGCTTCCACAAAATTTGTCttcaaatatttcaatttttgataTAAGTTACAATAAGTTTTATGGTAGAGTTCCAATTGGAGTATCTTCATGGACTAATGTGGTTGAGTTTAAGGCTAGTAAGAACTATCTTAATGGAAGTATTCCTCAAGAGCTAACAAATCTTCCGAAGCTCGAAACATTGTTGCTTGATCAAAATCAGTTTAAAGGGTCACTTCCAAATGATATGATATCATGGAAATCATTAGTGACACTAAATTTGAGCCAAAACCAGCTCAATGGACACATTCCAATATCAATTGGTCATTTGCCTTCACTTGGTGTTCTTGATCTATCAGAAAATCAATTCACCGGCGAAATACCGTCTATACTTCCTAGAATCACAAATCTCAATCTATCATCCAATTTTTTGACAGGAAGAGTTCCtagtgaatttgaaaattcagCTTTTGATAGAAGCTTTTTGAACAATTCTGGTTTATGTGCTGATACACCAACACTTAGTGTTACCCTTTGCAATTTTGGCCttaaaaaatcaaccaaaacatcACATTGGTCTCTTGGTTTGATTATTAGCCTAATTGTGGTGATTTTcttgttggttttgttttcatcattcATGATTATCAAACTATACAATAAAAGGAAACAAGCACTGGAAAATTCATGGAAGCTCATTTCATTTCAAAGGCTAAGTTTCACAGAATCAAACATAGTTTCCTCATTGGCAGAACAAAACATCATTGGAAGTGGTGGATTCGGCACGGTATACCGCGTTCCAGTCGACGGTTTAGGCTATGTTGCTGTGAAAAAAATCACTAGCAACAGAAAGTTAAGGAAAAAGCTCGAAACTTCGTTTCGTGCAGAAGTTGAAATATTGCGCAATATTCGACATCGAAACATTGTGAAGCTATTGTGTTGTATCTCTAATGAGGATTCAATGATGCTTGTGTATGAGTATTTGGAACACAGCAGCCTAGACAAGTGGCTGCACAACAAGAATAAGTCATCAAATATCTCAGGTTCGGCGCGACATGTTGTCCTTGATTGGCCGAAGCGATTGCGAATAGCTATTGGGATTGCTCATGGTTTGTGCTACATGCACCATGATTGCTCGCCTCCGATTGTTCATCGCGATATAAAATCAAGCAACATTCTTTTGGATTCTCAATTCAATGCAAAAGTTGCTGATTTTGGTCTTGCTAGGTTGTTGATAAAGGCAGGACAATCTAACACCATGTCAGCTGTGATTGGATCATTTGGTTATATGGCTCCAGAATATGTTCAAACAACTAAAGTGAATGAAAAGATTGATGTCTTCAGCTTTGGTGTTATCCTATTGGAACTAACAACTGGTAAAGAAGCTACTTATGGTGATGAGCATTCATCACTTGTAGAATGGTCATGGAGGCATGTTCATGTAGGAAGCAATATAGAAGATTTGCTAGACAAAGATTTTGTGGAACAAAGTTATTTGGATGAAATGTGTTGCATTTTCAAACTTGGAATAATGTGTACTACAACATTTCCTTCTAGTAGACCTTCCATGAAAGAGGTGTTAAATATATTGCTTAGAAGTGAAGGAGGGATTGTGTTTGGAGAGAGGAATGTTATTGTTAGGGAATATGATGATGCTCCTTttcttaaaaattcaaaaagggATAGTAGGTTAGATTTTGTTGATAGTGATAGTGACTAA 3036 0.3304 MTILATSHINFSLYFHISLFLILSHANSQSQQEHLILLKLKLHLQNPSFLNHWNSSNTSHCSWPKIICTKGSVTGLTLVNSNITQTIPSFICDLKNLTHVDFSKNFIPGEFPKSLFKCSKLEYLDLSMNNFVGKIPYDIQTLVNLQYLNLGSTYFSGDIPSSIGKLKDLRFLYLQYSSFNGTFPDEIGNLFNLEFLDMSSNYFLPPLKLPLSIIKLKKLKVFYMYGSNLVGEIPEAIGEMVSLENLDLSVNNLSGKIPSGLFMLKNLSIVYLDRNSLFGEIPSVVEALNLVELDVAENNLTGKIPNDFGKLIKLTCLNLFMNKFLGEIPQSIGKLPSLKGFSIFKNKFSGTIPSDFGLYSKLEYFDIAMNNFKGRLPYNLCYHGKLQNLTVYENHLSGELPKSLGNCSSLLEVKIYNNEFYGKIPGGLWRAENLLFFMVSHNKFIGELPQNLSSNISIFDISYNKFYGRVPIGVSSWTNVVEFKASKNYLNGSIPQELTNLPKLETLLLDQNQFKGSLPNDMISWKSLVTLNLSQNQLNGHIPISIGHLPSLGVLDLSENQFTGEIPSILPRITNLNLSSNFLTGRVPSEFENSAFDRSFLNNSGLCADTPTLSVTLCNFGLKKSTKTSHWSLGLIISLIVVIFLLVLFSSFMIIKLYNKRKQALENSWKLISFQRLSFTESNIVSSLAEQNIIGSGGFGTVYRVPVDGLGYVAVKKITSNRKLRKKLETSFRAEVEILRNIRHRNIVKLLCCISNEDSMMLVYEYLEHSSLDKWLHNKNKSSNISGSARHVVLDWPKRLRIAIGIAHGLCYMHHDCSPPIVHRDIKSSNILLDSQFNAKVADFGLARLLIKAGQSNTMSAVIGSFGYMAPEYVQTTKVNEKIDVFSFGVILLELTTGKEATYGDEHSSLVEWSWRHVHVGSNIEDLLDKDFVEQSYLDEMCCIFKLGIMCTTTFPSSRPSMKEVLNILLRSEGGIVFGERNVIVREYDDAPFLKNSKRDSRLDFVDSDSD 1011
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03463 1011 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 13 1002 - -
Tsu03g03463 1011 SUPERFAMILY L domain-like 37 285 - -
Tsu03g03463 1011 Pfam Protein kinase domain 690 967 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03463 1011 Pfam Leucine rich repeat 74 131 IPR001611 GO:0005515
Tsu03g03463 1011 Gene3D Ribonuclease Inhibitor 22 80 IPR032675 -
Tsu03g03463 1011 Gene3D Ribonuclease Inhibitor 81 207 IPR032675 -
Tsu03g03463 1011 ProSitePatterns Protein kinases ATP-binding region signature. 694 717 IPR017441 GO:0005524
Tsu03g03463 1011 SUPERFAMILY Protein kinase-like (PK-like) 681 969 IPR011009 -
Tsu03g03463 1011 Gene3D Transferase(Phosphotransferase) domain 1 767 975 - -
Tsu03g03463 1011 Gene3D Ribonuclease Inhibitor 472 615 IPR032675 -
Tsu03g03463 1011 SMART serkin_6 688 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03463 1011 SUPERFAMILY L domain-like 233 593 - -
Tsu03g03463 1011 Gene3D Ribonuclease Inhibitor 208 471 IPR032675 -
Tsu03g03463 1011 Pfam Leucine Rich Repeat 289 311 IPR001611 GO:0005515
Tsu03g03463 1011 SMART LRR_typ_2 240 264 IPR003591 -
Tsu03g03463 1011 SMART LRR_typ_2 549 577 IPR003591 -
Tsu03g03463 1011 SMART LRR_typ_2 501 525 IPR003591 -
Tsu03g03463 1011 SMART LRR_typ_2 94 118 IPR003591 -
Tsu03g03463 1011 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 13 1002 - -
Tsu03g03463 1011 Gene3D Phosphorylase Kinase; domain 1 664 766 - -
Tsu03g03463 1011 ProSiteProfiles Protein kinase domain profile. 688 970 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03463 1011 Pfam Leucine rich repeat N-terminal domain 32 68 IPR013210 -
Tsu03g03463 1011 ProSitePatterns Serine/Threonine protein kinases active-site signature. 821 833 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03463 Tsu-Chr3 47702683 47706545 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03463 22 1006 Receptor kinase-like Gene Family AT5G25930 50.945 0.0 953
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu03g03463 Pkinase 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03463 - - cam:101515509 1589.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03463 03 47702683 47706545 Tsu03g03463 03 47702683 47706545 ECH