Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03461 ATGAAAACATCAACACTTTCATTCCACTATGTTCTAACATTTTTTCTCATCATTCTAAGACATGCAAAATCTATATCTCATCAAAATCTTTATGATCAAGAACATGAAATcctaatgaaaataaaacaacaccTTGAAAATCCACCATACCTTAGTCATTGGACCAAATCAAAAACCTCTCACTGTTCTTGGCCAGAGATCATTTGCACCAATGGTTCTGTCACAGGGTTGACTGTGGTCAACTACAACATATATCAAATATTACCCTCTTTCATATGTGACCTTCAAAATCTCACACATGTTGATTTCAACAACAATTACATTCCTGGGATGTTTCCAACATATCTATATAATTGTTCAAAATTGGAATATCTTGATTTAtcaatgaacaatttttttggaaatattcctaatgatattttcaaattatcTAATTTGAATTATCTTAATCTTAGTTACACTAATTTCACTGATGATATTCCTTCAAGTATTGGAAGATTGAAGAATTTGAGATATCTTGCACTTCAAGTTTGTCTTTTTAATGGAACTTTCCCGGATGAAATTGGAAACTTGTTGAATCTTGAAACATTGGATTTGTCGTCGAATAATTTGTTTAAGAGTTCTAAGTTGCCATTGAATTGGACCAAGTTGAATAAATTGAAGGTTTTTTATATGTATGACTGCAACCTGTTTGGTGAAATGCCTGAACCAATGGGAAATATGGTTTCTTTGGAGGATTTAGATATTTCACAAAATAGTTTAACTGGGAAAATTCCTAGTGGTTTGTTCATGCTGAAGAATCTCAGTAGATTGCAACTTTGGCAAAATAGTCTATCTGGAGAGATACCTGGTGTggttgaagcattaaatttgaCAATCATTGATCTTGGAGCGAATAATCTCGCAGGAAAAATACCAAATGATTTTGGCAGTCTTGTAAAACTAAACTACCTGAGCTTGTCTGCAAATCAATTATTTGGAGAGGTACCGGAAAGCATCGGTTATTTGCCGGCTCTGActgattttattgtttttgagaACAATTTATCAGGTAAGCTTTCTCAAAATTTTGGTAGGTTTTCTAAACTTGAAACTTTTAGGATTGAATCTAATAGTTTCAGTGGAAAGCTACCACAAAATTTGTGCTATCATGAAAAGTTAGTTGCTTTAACTGCTCATGAAAATAATCTGAGCGGCGAGTTACCAAAATCACTTGGAAATTGTAGTAGCTTGTTTTTGCTGAATATTTACAAGAATGAATTTTCTGGTAAAATTCCTTCCGGACTTTGgaatatcatcaattttaagattttaatgaTAAGTCATAATAAGTTCTACGGTGAAATTCCTCAGAATATTTCTTCAAGTGTTTCACTTTTTGATATAAGTTACAATCAGTTTTATGGTAGAATTCCTCAAAATTTGTCTTCAAGtatttcactttttaatatAAGTTACAATCAATTTTATGGTGGAATTCCAATTGGAGTATCTTCTTGGACTAATGTGGCTGAGTTTATAGCAAGCAAGAATTATCTTAATGGAAGTATTCCTAAAGAGTTAGCAACTCTTCCTAATCTAGAAAGATTGTTGCTTGATCAAAATCAGCTTAAAGGGTCACTTCCATTTGATGTAATATCATGCAAATCCTTGGTGACTTTAAATTTGAGCCAAAATCAACTTTATGGACAAATTCCAATTTCAATTGGTCATTTACCTTCCCTTAATGTTCTTGATCTGTCAGAAAATCAATTCTCCGGAGAAATACCTTCTATACTCACAAAACTCACAAATCTCAATCTCAATCTATCATCCAATCATTTAACAGGAAGAGTTCCAAGTGAATTTGAAATATCAGCTTATGATACAAGCTTTTTGAACAATTCCGGTTTATGTGCTGATACATCAGTATTAAACCTTACCCTTTGCAATTTTGGCCTTAAAAAACCAATCACTGCTTCACATTGGTTTCTTGGTTTGGTTATTAGCCTAACCGTGGTGACTTTCTTGTTGGCATCATTCAAGATTATCAAACTTTACAGAAAAAGAGAACAGCCAGTGGAAAATTCATGGAAGTTCATTTCATTTCAAAGGTTAAGCTTCACAGAATCAAACATAGTTTCCTCAATGACAGAAGAAAATATCATTGGAAGTGGTGGATTTGGCACGGTGTATCGCGTACCAGTCGACGATTTAACCTATGTTGCTGTGAAAAAAATTGCGAGTAACAAAAAGTTAAGGCAAAAGCTCGAAGCTTCGTTTCAAGCTGAAGTTAAAATATTGAGCAGCATTCGACATCGAAACATTGTGAAGTTGTTGTGTTGTATCTCTAATGAGGACTCAATGATGCTTGTATATGAGTATTTGGAACATAGCAGCCTAGACAAGTGGCTGCACAACAAGAATAGCTCATCGGATATGTCAGGTTCAGCGCAGGATGTCATACTTGATTGGCCTAAGCGATTGCGGATAGCCATTGGGATTGCTCAAGGTTTGTGCTACATGCACCATGATTGTTCGCCTCCGATTGTTCACCGCGATATAAAAACAAGCAACATACTTTTGGATTCTGAATTCAATGCAAAAGTTGCTGATTTTGGTCTTGCTAAACTGTTGATGAAGCCGGGACAATTTAACACCATGTCAACTGTGGCTGGATCATTTGGCTATATGGCTCCAGAATATGTTCAAACAACTAAACTCAATGAAAAGATTGATGTCTTCAGCTTTGGTGTTATCCTATTGGAACTTACAACCGGTAAAAAAGCTACTCGTGGTGATGAACATTCATCGCTCGCAGACTGGGCTTGGCGCCACATTCAAGCAGAAAGTAATATTGAAGAGTTGCTTGACAAAGAAGTAACGGAACAAAGTTATTTGGATGAAATGTGTGGCATTTTCAAACTTGGTATAATGTGTACTGCTAAACTTCCTTCTAGAAGACCTTCCATGAAAGATGTGTTACACATTTTGCTTAGATGTGAAGGAGGGACTGTGTTTGGTCAGAGGAATGATATTGTTGAGGaatatgatgttgttgttccTTTTCTTTAA 3054 0.3346 MKTSTLSFHYVLTFFLIILRHAKSISHQNLYDQEHEILMKIKQHLENPPYLSHWTKSKTSHCSWPEIICTNGSVTGLTVVNYNIYQILPSFICDLQNLTHVDFNNNYIPGMFPTYLYNCSKLEYLDLSMNNFFGNIPNDIFKLSNLNYLNLSYTNFTDDIPSSIGRLKNLRYLALQVCLFNGTFPDEIGNLLNLETLDLSSNNLFKSSKLPLNWTKLNKLKVFYMYDCNLFGEMPEPMGNMVSLEDLDISQNSLTGKIPSGLFMLKNLSRLQLWQNSLSGEIPGVVEALNLTIIDLGANNLAGKIPNDFGSLVKLNYLSLSANQLFGEVPESIGYLPALTDFIVFENNLSGKLSQNFGRFSKLETFRIESNSFSGKLPQNLCYHEKLVALTAHENNLSGELPKSLGNCSSLFLLNIYKNEFSGKIPSGLWNIINFKILMISHNKFYGEIPQNISSSVSLFDISYNQFYGRIPQNLSSSISLFNISYNQFYGGIPIGVSSWTNVAEFIASKNYLNGSIPKELATLPNLERLLLDQNQLKGSLPFDVISCKSLVTLNLSQNQLYGQIPISIGHLPSLNVLDLSENQFSGEIPSILTKLTNLNLNLSSNHLTGRVPSEFEISAYDTSFLNNSGLCADTSVLNLTLCNFGLKKPITASHWFLGLVISLTVVTFLLASFKIIKLYRKREQPVENSWKFISFQRLSFTESNIVSSMTEENIIGSGGFGTVYRVPVDDLTYVAVKKIASNKKLRQKLEASFQAEVKILSSIRHRNIVKLLCCISNEDSMMLVYEYLEHSSLDKWLHNKNSSSDMSGSAQDVILDWPKRLRIAIGIAQGLCYMHHDCSPPIVHRDIKTSNILLDSEFNAKVADFGLAKLLMKPGQFNTMSTVAGSFGYMAPEYVQTTKLNEKIDVFSFGVILLELTTGKKATRGDEHSSLADWAWRHIQAESNIEELLDKEVTEQSYLDEMCGIFKLGIMCTAKLPSRRPSMKDVLHILLRCEGGTVFGQRNDIVEEYDVVVPFL 1017
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03461 1017 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 9 473 - -
Tsu03g03461 1017 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 469 1013 - -
Tsu03g03461 1017 SUPERFAMILY RNI-like 290 618 - -
Tsu03g03461 1017 Pfam Protein kinase domain 712 989 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03461 1017 Gene3D Ribonuclease Inhibitor 32 138 IPR032675 -
Tsu03g03461 1017 Gene3D Ribonuclease Inhibitor 478 546 IPR032675 -
Tsu03g03461 1017 ProSitePatterns Protein kinases ATP-binding region signature. 716 739 IPR017441 GO:0005524
Tsu03g03461 1017 Gene3D Ribonuclease Inhibitor 549 632 IPR032675 -
Tsu03g03461 1017 Gene3D Ribonuclease Inhibitor 209 477 IPR032675 -
Tsu03g03461 1017 SMART LRR_typ_2 312 336 IPR003591 -
Tsu03g03461 1017 SMART LRR_typ_2 191 217 IPR003591 -
Tsu03g03461 1017 SMART LRR_typ_2 143 167 IPR003591 -
Tsu03g03461 1017 SMART LRR_typ_2 241 265 IPR003591 -
Tsu03g03461 1017 SMART LRR_typ_2 95 119 IPR003591 -
Tsu03g03461 1017 SMART LRR_typ_2 524 548 IPR003591 -
Tsu03g03461 1017 SMART LRR_typ_2 572 596 IPR003591 -
Tsu03g03461 1017 SUPERFAMILY L domain-like 38 373 - -
Tsu03g03461 1017 Pfam Leucine rich repeat N-terminal domain 33 69 IPR013210 -
Tsu03g03461 1017 SMART serkin_6 710 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03461 1017 ProSitePatterns Serine/Threonine protein kinases active-site signature. 843 855 IPR008271 GO:0004672|GO:0006468
Tsu03g03461 1017 Gene3D Ribonuclease Inhibitor 139 208 IPR032675 -
Tsu03g03461 1017 Gene3D Transferase(Phosphotransferase) domain 1 789 1003 - -
Tsu03g03461 1017 ProSiteProfiles Leucine-rich repeat profile. 193 214 IPR001611 GO:0005515
Tsu03g03461 1017 ProSiteProfiles Protein kinase domain profile. 710 992 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03461 1017 SUPERFAMILY Protein kinase-like (PK-like) 702 991 IPR011009 -
Tsu03g03461 1017 Pfam Leucine Rich Repeat 121 142 IPR001611 GO:0005515
Tsu03g03461 1017 Gene3D Phosphorylase Kinase; domain 1 681 788 - -
Tsu03g03461 1017 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 9 473 - -
Tsu03g03461 1017 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 469 1013 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03461 Tsu-Chr3 47684978 47688948 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03461 34 996 Receptor kinase-like Gene Family AT5G25930 48.513 0.0 882
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu03g03461 Pkinase 8.6e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03461 - - cam:101515509 1393.64