Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03447 ATGGACTCTAAAAAAGAGGAAGGGGTGAGAAAAGTAAAAGAGGGAGGTTCAATAGGCATAATTTTGAGATATGGTGATTGGATTGATGTTGTTTTAATGTTGATGGGTGCTTTGGGAGCAATAGGAGATGGAATGTCAACAAATGTTTTGCTTCTCTTTGCTAGCCGTATTATGAACAGCTTAGGTGGcagtaataataacaatagtGAAACTTCCATGTCTGAGGTTGAAATGTGCAGCTTATATTTTGTCTACTTGGGATTGGCAGCAATGGTGGTGGCTTTCATGGAAGGCTATTGTTGGAGCAAAACAAGTGAGAGGCAGGTGTTGAGAATTCGTTACAAGTATTTAGAAGCTGTTCTGAGACAAGAAGTGGGCTTTTTTGATTCACAAGAAACAAATACTTCTGAAATCATTAATAGCATTTCAAAGGATACTAATCTAATACAAGAAGTTCTAAGTGAAAAGGTGCCTTTATTTTTGATGcaatcatcatcattcatctcaGGAATTTGTTTTGCTACATACTTCTCATGGAGATTAGCATTAGTAGCATTTCCAACACTTCTTTTACTAATAATCCCTGGGATGATATATGGAAAATACTTAATCTATTTATCAAAATCATCAATGAAAGAATATGGAAAAGCAAATGCAATTGTTCAACAAGCATTAAGTTCAATAAAAACAGTTTATTCATTCACTGCTGAGAAGAGAATAATGGAAAAATATTCAGAAATATTAGAAAAAACTTCAAAGCTTGGAATAAAACAAGGTATAGCTAAAGGTTTAGCTGTTGGAAGCACTGGTTTGTCTTTTGCAATTTGGGCTTTTCTTGCTTGGTATGGAAGTCATTTGGTTATGTATAAAGGTGAAAGTGGTGGAAGAATCTATGCTGCTGGAATTTGCTTCATAATGAGTGGATTATCCTTGGGAGTGGTACTTCCTGATTTGAAATACTTCACAGAAGTATCAATTTCTGCATCAAGAATATTTGCTATGATTGATAGAACACCAGAAATTGATAGTGAAGACACAACAAAAGGAATTATATTAGAAACCATAAGTGGCAAATTAAATTTTGAGCATGTAAAATTCACATACCCTTCTAGACAAGAAAGTGTTGTACTTTATGATTTTAATCTTCAAATTGAAGCTGGAAAAACTGTTGCATTAGTTGGTGCAAGTGGAAGTGGTAAATCAACAGCAATAGCATTAGTACAAAGATTTTATGATGCTAATGAAGGTGTTGTTAAGGTTGATGGTTTTGATATAAAAAGTTTACAATTGAAATGGATAAGAGGTAAAATGGGACTTGTGAGTCAAGAACATGCTATGTTTGGTACATCTATTAAGGAGAATattatgtttggtaaaaatgaTGCTACTATGGATGAAATTGTTGCTGCTGCTACTGCTGCTAATGCTCATAATTTCATTAGACAACTTCCTGATGGATATGAAACTAAGATTGGAGAAAGAGGAGCACTTCTTTCAGGAGGACAAAAGCAAAGAATAGCCATTGCAAGAGCTATCATAAAAAATCCAGTAATTCTCTTACTTGATGAAGCAACTAGTGCACTTGACTCTGAATCTGAATTATTGGTCCAAAATGCCCTTGATCAAGCCTCCATGGGAAGGACTACTTTGGTTGTTGCTCACAAGCTATCAACAATCAGAAATGCAGACCTAATAGCAGTTATGAGTAATGGTTGCATCATTGAAACCGGCACACACAATGAACTAATCAACATTCCAAATGGCCATTATGCAAAATTAGCAAAATTACAAACACAATTAAGCATTAATGATGATCAAGATCAAAATCAAGAACAACAAAGCATTCTTCTTTCTGCAGCAAGAAGTAGTGCAGGTAGAACAAGCACTGCAAGATCAAGTCCTGCCGTAATGTTTCCGAAATCACCATTACCTAATGATATAATCACTTCTCAAGTTTCTCATCCATCACCTTCATTTTCAAGGCTACTTTGTCTAAATTCACCTGAATGGAAACAAGGACTAATCGGAACACTCTCAGCTATAGCGTTTGGTTCAATTCAACCGATTTATGCATTAACAATCGGTGGCATGATTTCGGCTTTTTTCGCTACAAGTCATCATGAAATGAAACACAGAATCATGAACTATTCATTGATTTTCACTTCTCTATCACTCGCTTCTATTACACTCAATCTATTGCAACACTACAATTTTGCTTATATGGGAGCAAagttaacaaaaaggataagATTATGTATGTTGGAGAAAATCTTAACCTTCGAAACCGcttggtttgatgaagaaaaaaactCTAGTGGAGCATTGTGTTCGAGATTGAGTAACGAAGCTTCGATGGTGAAGTCACTCGTTGCTGATAGAGTCTGTTTACTTGTTCAAACCGCTTCAGCCGTAACAATCGCGATGATTATAGGACTTGTTGTAGCATGGAAGCTAGCACTTGTTATGATCGCAGTTCAACCGCTTACAATACTTTGTTTTTACACACGAAAGGTTTTGCTTTCTACGCTTTCAACTAAATTCGTTAAGGCACAGAACCAAAGCACGCAGATTGCTGTCGAAGCGGTTTATAATCACAGAATTGTGACCTCATTTGGAAGCATAGAAAAAGTTTTGAGACTGTTTGACAAGGCGCAAGAGGCACCGAGGATGGAAGCTAGGAAGAAATCCTGGCTAGCTGGCATTGGTATGGGATCTGCTCAGTGTTTAACTTTTATGTGTTGGGCTTTGGATTTTTGGTATGGTGGTAGATTGGTCGAAAAGAGAGAAATTTCTTCCGGCGAtgtgtttaaaactttttttgtTACCGGAAAAGTTATAGCCGAAGCCGGTAGCATGACTTCCGATCTTGCTAAAAGCTCAACAGCAGTTGCATCAGTGTTTGAAATTCTCGATAGACATTCACTTATTCCGAAGGATGGTGAAGATACCAATGGAACTATATTGGAAAAGCTAAGTGGAAAAATAGAATTAAAGAATGTTGATTTTTCTTATCCAAGTAGAGCAAAGACACCaattttgaacaaattttgcTTGGAAGTAAAGCCAGGAAAAAGTGTTGGACTAGTTGGAAAAAGTGGATGTGGAAAATCAACAGTGATTGCATTAATACAAAGATTCTATGATGTTGAAAGAGGATCAGTGAAAATTGATAATGTGGATTTAAGAGAATTAGATATTCATTGGTATAGACAACACACTGCATTAGTAAGTCAAGAACCTGTGATATATTCTGGTAGCATAAGGGATAATATTTTGTTTGGAAAACAAGATGCAAATGAAAATGAAGTTGTTGAAGCTGCTAGATCTGCAAATGCTCATGATTTCATATCATCATTGAAAGATGGATATGAAACTCAATGTGGAGAAAGAGGAGTTCAATTATCAGGAGGACAAAAACAAAGAATAGCAATTGCAAGAGCCATAATCAGAAATCCAATAATACTTCTATTAGATGAAGCAACAAGTGCTTTGGATGTGCAATCAGAACAAGTTGTTCAAGAAGCACTTGATAGGATTATGGTTGGAAGAACTACGATTGTTGTGGCACATAGACTTAACACAATCAAAGAACTTGATTCAATTGCTTATCTGTTAGAGGGTAAGGTTGTGGAACAAGGAAGCTATTCTCAGCTTAAGCACAAGAGAGGTGCTTTTTTCAACCTTGCCAACCATCAAATCCAGACTTAG 3708 0.3511 MDSKKEEGVRKVKEGGSIGIILRYGDWIDVVLMLMGALGAIGDGMSTNVLLLFASRIMNSLGGSNNNNSETSMSEVEMCSLYFVYLGLAAMVVAFMEGYCWSKTSERQVLRIRYKYLEAVLRQEVGFFDSQETNTSEIINSISKDTNLIQEVLSEKVPLFLMQSSSFISGICFATYFSWRLALVAFPTLLLLIIPGMIYGKYLIYLSKSSMKEYGKANAIVQQALSSIKTVYSFTAEKRIMEKYSEILEKTSKLGIKQGIAKGLAVGSTGLSFAIWAFLAWYGSHLVMYKGESGGRIYAAGICFIMSGLSLGVVLPDLKYFTEVSISASRIFAMIDRTPEIDSEDTTKGIILETISGKLNFEHVKFTYPSRQESVVLYDFNLQIEAGKTVALVGASGSGKSTAIALVQRFYDANEGVVKVDGFDIKSLQLKWIRGKMGLVSQEHAMFGTSIKENIMFGKNDATMDEIVAAATAANAHNFIRQLPDGYETKIGERGALLSGGQKQRIAIARAIIKNPVILLLDEATSALDSESELLVQNALDQASMGRTTLVVAHKLSTIRNADLIAVMSNGCIIETGTHNELINIPNGHYAKLAKLQTQLSINDDQDQNQEQQSILLSAARSSAGRTSTARSSPAVMFPKSPLPNDIITSQVSHPSPSFSRLLCLNSPEWKQGLIGTLSAIAFGSIQPIYALTIGGMISAFFATSHHEMKHRIMNYSLIFTSLSLASITLNLLQHYNFAYMGAKLTKRIRLCMLEKILTFETAWFDEEKNSSGALCSRLSNEASMVKSLVADRVCLLVQTASAVTIAMIIGLVVAWKLALVMIAVQPLTILCFYTRKVLLSTLSTKFVKAQNQSTQIAVEAVYNHRIVTSFGSIEKVLRLFDKAQEAPRMEARKKSWLAGIGMGSAQCLTFMCWALDFWYGGRLVEKREISSGDVFKTFFVTGKVIAEAGSMTSDLAKSSTAVASVFEILDRHSLIPKDGEDTNGTILEKLSGKIELKNVDFSYPSRAKTPILNKFCLEVKPGKSVGLVGKSGCGKSTVIALIQRFYDVERGSVKIDNVDLRELDIHWYRQHTALVSQEPVIYSGSIRDNILFGKQDANENEVVEAARSANAHDFISSLKDGYETQCGERGVQLSGGQKQRIAIARAIIRNPIILLLDEATSALDVQSEQVVQEALDRIMVGRTTIVVAHRLNTIKELDSIAYLLEGKVVEQGSYSQLKHKRGAFFNLANHQIQT 1235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03447 1235 Gene3D ABC transporter type 1, transmembrane domain 21 613 IPR036640 GO:0005524|GO:0016021
Tsu03g03447 1235 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 22 1232 IPR039421 -
Tsu03g03447 1235 ProSitePatterns ABC transporters family signature. 498 512 IPR017871 GO:0005524
Tsu03g03447 1235 ProSitePatterns ABC transporters family signature. 1134 1148 IPR017871 GO:0005524
Tsu03g03447 1235 Gene3D - 349 598 IPR027417 -
Tsu03g03447 1235 SUPERFAMILY ABC transporter transmembrane region 661 972 IPR036640 GO:0005524|GO:0016021
Tsu03g03447 1235 SMART AAA_5 1022 1214 IPR003593 -
Tsu03g03447 1235 SMART AAA_5 386 572 IPR003593 -
Tsu03g03447 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 323 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu03g03447 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 984 1232 IPR027417 -
Tsu03g03447 1235 Pfam ABC transporter 1014 1162 IPR003439 GO:0005524
Tsu03g03447 1235 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 331 - -
Tsu03g03447 1235 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 995 1231 IPR003439 GO:0005524
Tsu03g03447 1235 Pfam ABC transporter transmembrane region 675 941 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu03g03447 1235 Pfam ABC transporter transmembrane region 34 290 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu03g03447 1235 Gene3D - 986 1235 IPR027417 -
Tsu03g03447 1235 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 674 940 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu03g03447 1235 SUPERFAMILY ABC transporter transmembrane region 28 342 IPR036640 GO:0005524|GO:0016021
Tsu03g03447 1235 PANTHER ABC TRANSPORTER B FAMILY MEMBER 8-RELATED 22 1232 - -
Tsu03g03447 1235 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 597 IPR027417 -
Tsu03g03447 1235 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 359 595 IPR003439 GO:0005524
Tsu03g03447 1235 CDD ABC_6TM_Pgp_ABCB1_D2_like 665 976 - -
Tsu03g03447 1235 CDD ABC_MTABC3_MDL1_MDL2 995 1232 - -
Tsu03g03447 1235 Gene3D ABC transporter type 1, transmembrane domain 643 980 IPR036640 GO:0005524|GO:0016021
Tsu03g03447 1235 Pfam ABC transporter 379 526 IPR003439 GO:0005524
Tsu03g03447 1235 CDD ABC_MTABC3_MDL1_MDL2 361 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03447 Tsu-Chr3 47552363 47565281 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03447 6 1232 Calmodulin-binding Proteins AT2G36910 42.584 0.0 947
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03447 K05658 - gmx:100801088 2021.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03447 03 47552363 47565281 Tsu03g03447 03 47552363 47565281 ECH