Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03438 ATGCGAAGTTGGGGAAAATGGGTATCCGAAATCCGAGAGCCTCGGAAAAAAAACCGAATCTGGCTCGGTACATTTGCAACAGCCGAAATGGCAGCGCGTGCACACGATGCAGCTGCACTAACAATAAAAGGTACATCAGCAATCCTTAACTTCCCCGAACTATCTGCTTCACTTCCTCGACCAGTATCCAGCTCACCAAGAGATGTTCAAGCCGCAGCCGCGAAAGCCGCTTCAATGGTTGCTCCACCGCAATCACCAGCaccatcttcttcatctttatcatcatcttcatcatcgtcttcatcttcatcttcatcttcttttttctccTCGACGCCCGAAGATCtcggggagattgttgagttgcCAACACTTGGACCCGACCCAGATAGTGAGTTTGTGTTTTTTGACCCGGTTGATTATTCTCATTTGTGGTATCAAAGCATTTATGATGATAATGAAGAGAATAGTTACTTGAACATGATATCAATGCATGACCCAGAAAACACGCTACTTTCATTGTGGTCTTGA 531 0.3861 MRSWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDAAALTIKGTSAILNFPELSASLPRPVSSSPRDVQAAAAKAASMVAPPQSPAPSSSSLSSSSSSSSSSSSSSFFSSTPEDLGEIVELPTLGPDPDSEFVFFDPVDYSHLWYQSIYDDNEENSYLNMISMHDPENTLLSLWS 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03438 176 MobiDBLite consensus disorder prediction 83 112 - -
Tsu03g03438 176 CDD AP2 1 54 IPR001471 GO:0003700|GO:0006355
Tsu03g03438 176 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 1 154 - -
Tsu03g03438 176 Gene3D AP2/ERF domain 1 53 IPR036955 GO:0003700|GO:0006355
Tsu03g03438 176 MobiDBLite consensus disorder prediction 58 112 - -
Tsu03g03438 176 Pfam AP2 domain 2 44 IPR001471 GO:0003700|GO:0006355
Tsu03g03438 176 SUPERFAMILY DNA-binding domain 2 52 IPR016177 GO:0003677
Tsu03g03438 176 SMART rav1_2 1 58 IPR001471 GO:0003700|GO:0006355
Tsu03g03438 176 ProSiteProfiles AP2/ERF domain profile. 1 52 IPR001471 GO:0003700|GO:0006355
Tsu03g03438 176 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 1 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03438 Tsu-Chr3 47351109 47351811 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03438 1 163 AP2-EREBP Transcription Factor Family AT5G11590 58.382 4.17e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu03g03438 AP2 1.9e-10 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03438 K09286 - gmx:100804801 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00239 02 2036432 2037595 Tsu03g03438 03 47351109 47351811 PCT