Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu03g03438 | ATGCGAAGTTGGGGAAAATGGGTATCCGAAATCCGAGAGCCTCGGAAAAAAAACCGAATCTGGCTCGGTACATTTGCAACAGCCGAAATGGCAGCGCGTGCACACGATGCAGCTGCACTAACAATAAAAGGTACATCAGCAATCCTTAACTTCCCCGAACTATCTGCTTCACTTCCTCGACCAGTATCCAGCTCACCAAGAGATGTTCAAGCCGCAGCCGCGAAAGCCGCTTCAATGGTTGCTCCACCGCAATCACCAGCaccatcttcttcatctttatcatcatcttcatcatcgtcttcatcttcatcttcatcttcttttttctccTCGACGCCCGAAGATCtcggggagattgttgagttgcCAACACTTGGACCCGACCCAGATAGTGAGTTTGTGTTTTTTGACCCGGTTGATTATTCTCATTTGTGGTATCAAAGCATTTATGATGATAATGAAGAGAATAGTTACTTGAACATGATATCAATGCATGACCCAGAAAACACGCTACTTTCATTGTGGTCTTGA | 531 | 0.3861 | MRSWGKWVSEIREPRKKNRIWLGTFATAEMAARAHDAAALTIKGTSAILNFPELSASLPRPVSSSPRDVQAAAAKAASMVAPPQSPAPSSSSLSSSSSSSSSSSSSSFFSSTPEDLGEIVELPTLGPDPDSEFVFFDPVDYSHLWYQSIYDDNEENSYLNMISMHDPENTLLSLWS | 176 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu03g03438 | 176 | MobiDBLite | consensus disorder prediction | 83 | 112 | - | - | |
Tsu03g03438 | 176 | CDD | AP2 | 1 | 54 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu03g03438 | 176 | PANTHER | DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE | 1 | 154 | - | - | |
Tsu03g03438 | 176 | Gene3D | AP2/ERF domain | 1 | 53 | IPR036955 | GO:0003700|GO:0006355 | |
Tsu03g03438 | 176 | MobiDBLite | consensus disorder prediction | 58 | 112 | - | - | |
Tsu03g03438 | 176 | Pfam | AP2 domain | 2 | 44 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu03g03438 | 176 | SUPERFAMILY | DNA-binding domain | 2 | 52 | IPR016177 | GO:0003677 | |
Tsu03g03438 | 176 | SMART | rav1_2 | 1 | 58 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu03g03438 | 176 | ProSiteProfiles | AP2/ERF domain profile. | 1 | 52 | IPR001471 | GO:0003700|GO:0006355 | |
Tsu03g03438 | 176 | PANTHER | ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED | 1 | 154 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu03g03438 | Tsu-Chr3 | 47351109 | 47351811 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu03g03438 | 1 | 163 | AP2-EREBP Transcription Factor Family | AT5G11590 | 58.382 | 4.17e-49 | 157 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Tsu03g03438 | AP2 | 1.9e-10 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu03g03438 | K09286 | - | gmx:100804801 | 193.356 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu02g00239 | 02 | 2036432 | 2037595 | Tsu03g03438 | 03 | 47351109 | 47351811 | PCT |