Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03436 atgaTTAATGCTAATACTTCACCACccacttcatcttcatcacatTCACCACCACAATCATTGATCACTTGTTCAAGTGAAGATGAAAAGAGAGGCAAAAAAAGAGATAATAGTGGCAAGAATCATCATCCAGTTTATAGAGGAGTTAGAATGCGCAATTGGGGAAAATGGGTATCTGAAATTCGAGAGCCACGGAAGAAAAGCCGAATCTGGCTCGGCACATTCCCAACAGCTGAAATGGCAGCACGTGCACACGACGTAGCTGCACTTACCATTAAAGGCCCTACCGCATTCCTTAACTTCCCCGAGCTCGCAGCTTCTCTTCCTCGACCGGCTTCTAGTTCGCCAAGAGATGTTCAATCTGCAGCCGCTAAAGCCGCTTCCATGGTCGCTCCGCCACAATCATCGGCACCTtcttattcatcttcttcttcctcttccacCTCGACGCTAGATGATTTGGGCGAGATTATTGAACTACCGCAACTCGGAGCATGTTTTGAGTCAACCAACTCGAATAATGAGTTTGCGTTTTTCGACCCGGTTGATTATTCCGATCCCTCATGGTATCATAATATTTATGTTGATCAAGAAGATAATAGTTATGTTAGCGGATGCAACTTCAATATGCTATCAATGCATGACCTATGA 651 0.4132 MINANTSPPTSSSSHSPPQSLITCSSEDEKRGKKRDNSGKNHHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALTIKGPTAFLNFPELAASLPRPASSSPRDVQSAAAKAASMVAPPQSSAPSYSSSSSSSTSTLDDLGEIIELPQLGACFESTNSNNEFAFFDPVDYSDPSWYHNIYVDQEDNSYVSGCNFNMLSMHDL 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03436 216 MobiDBLite consensus disorder prediction 1 25 - -
Tsu03g03436 216 PRINTS Ethylene responsive element binding protein signature 46 57 IPR001471 GO:0003700|GO:0006355
Tsu03g03436 216 PRINTS Ethylene responsive element binding protein signature 68 84 IPR001471 GO:0003700|GO:0006355
Tsu03g03436 216 MobiDBLite consensus disorder prediction 109 148 - -
Tsu03g03436 216 MobiDBLite consensus disorder prediction 1 47 - -
Tsu03g03436 216 CDD AP2 46 104 IPR001471 GO:0003700|GO:0006355
Tsu03g03436 216 MobiDBLite consensus disorder prediction 132 148 - -
Tsu03g03436 216 MobiDBLite consensus disorder prediction 26 43 - -
Tsu03g03436 216 SMART rav1_2 45 108 IPR001471 GO:0003700|GO:0006355
Tsu03g03436 216 Gene3D AP2/ERF domain 45 103 IPR036955 GO:0003700|GO:0006355
Tsu03g03436 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 11 199 - -
Tsu03g03436 216 ProSiteProfiles AP2/ERF domain profile. 45 102 IPR001471 GO:0003700|GO:0006355
Tsu03g03436 216 SUPERFAMILY DNA-binding domain 45 103 IPR016177 GO:0003677
Tsu03g03436 216 Pfam AP2 domain 44 94 IPR001471 GO:0003700|GO:0006355
Tsu03g03436 216 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-LIKE 11 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03436 Tsu-Chr3 47310025 47310675 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03436 25 184 AP2-EREBP Transcription Factor Family AT5G11590 60.795 9.02e-62 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu03g03436 AP2 2.5e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03436 K09286 - gmx:100804801 209.149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03436 03 47310025 47310675 Tsu03g03436 03 47310025 47310675 ECH