Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03431 ATGGAATCTCAAGGCACCAATTTGATCCTATGGCGTTTTGTTTTGGCCAAtgtgattgtaatttttttcactCCAAAACTTAGTTTTGCCAAACAATCCAAGCTAATGGGcttaaaaatgaatatgatcGATAGTTGTTGGAGACCAAATCCTGAATGGAGGAGACATAGACAACAACTATCGACTTGCTCTGTAGGCTATGTTGGAAAGATGACAAACAACATTGGTAATGACCTCGTACATTATAAAGTTACAGacccaaatgatgatcttatAACTCCCAAACCTGGTACATTGAGATATGGACCTTCTGTAATTCAAGGTAAAGTGTGGATCACATTCCATAAAGATATGAATATTAGACTCATGAAACCCCTTCTCATTAGTAATTTCACTACCATTGATGGTCGCAGCGTCAATGTCCACATTGCTAATAATGCatgtttgatgattttcaagGCCACCAACATAATCATTCATAGCATTCGAATTCATCACTGCAAAGCTCAAGCACCAGGAATGGTGATGGGGCCTAATGGAAAGGTAATTCATTTAGGCCCAGTAGATGGAGATGCAATTAGATTGGTCACGGCTTCAAAAATTTGGATTGATCATAATACATTTTATGAATGTGAAGATGGTCTTCTTGATGTCACAAGGGGTTCAACTAATGTCACTATTTCCAATAATTGGTTTAGAGAACAAGATAAAGTTATGTTTCTTGGTCATGATGATGGATATGTGAGAGACAAAAACATGAAGGTTACCGTTTTGTACAATCATTTTGGACCTAACTGCAACCAACAAATGCCCTGgaTTCGCCATGGATATGCACATGTAGCCAACAATCTCTACTTTGGGTGGATGCAATATGCTATTGGTGGAAGTATGGGGCCCAGTCTCAAAAGCGAGGCTAACCTCTTCATAGCACCAAAAGTTGGAAGTAAAGAGGTAATATGGAGAAAAAATGGTAATACAAGTGCAGACAAATGggacttttattttgtaaggGACGCATTTAAAAATGGAGCCTCATTCGCAGTAACAAAAGGAGGACGTGTGCCAAAACCGAATTATAACAAAGATCAAAGTTTTAAAGTTGTTGATGTTAAATCTGTTAGATCATTGACAAGATCATCAGACGCATTTCAATGTAGTAGAACATCTATATGTTTAACTAAATAA 1185 0.3502 MESQGTNLILWRFVLANVIVIFFTPKLSFAKQSKLMGLKMNMIDSCWRPNPEWRRHRQQLSTCSVGYVGKMTNNIGNDLVHYKVTDPNDDLITPKPGTLRYGPSVIQGKVWITFHKDMNIRLMKPLLISNFTTIDGRSVNVHIANNACLMIFKATNIIIHSIRIHHCKAQAPGMVMGPNGKVIHLGPVDGDAIRLVTASKIWIDHNTFYECEDGLLDVTRGSTNVTISNNWFREQDKVMFLGHDDGYVRDKNMKVTVLYNHFGPNCNQQMPWIRHGYAHVANNLYFGWMQYAIGGSMGPSLKSEANLFIAPKVGSKEVIWRKNGNTSADKWDFYFVRDAFKNGASFAVTKGGRVPKPNYNKDQSFKVVDVKSVRSLTRSSDAFQCSRTSICLTK 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03431 394 PANTHER PECTATE LYASE 18-RELATED 3 388 IPR045032 GO:0030570
Tsu03g03431 394 PRINTS Pollen allergen Amb family signature 189 210 IPR018082 -
Tsu03g03431 394 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Tsu03g03431 394 PRINTS Pollen allergen Amb family signature 269 288 IPR018082 -
Tsu03g03431 394 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Tsu03g03431 394 PRINTS Pollen allergen Amb family signature 125 141 IPR018082 -
Tsu03g03431 394 PRINTS Pollen allergen Amb family signature 291 310 IPR018082 -
Tsu03g03431 394 PRINTS Pollen allergen Amb family signature 362 385 IPR018082 -
Tsu03g03431 394 Gene3D - 40 383 IPR012334 -
Tsu03g03431 394 SUPERFAMILY Pectin lyase-like 60 375 IPR011050 -
Tsu03g03431 394 Pfam Pectate lyase 133 308 IPR002022 -
Tsu03g03431 394 SMART amb_all 117 314 IPR002022 -
Tsu03g03431 394 PANTHER PECTATE LYASE 3 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03431 Tsu-Chr3 47253994 47255617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03431 71 328 Polysaccharide Lyase AT5G09280 67.054 3.35e-135 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03431 K01728 - gmx:100780437 645.58