Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03428 ATGGGAACTCAGCATGGTATCATGGTGCTTCCTTTCACCAAATTCATTCTGTTACAAAACCCCTTTCTCAAAAAGGTTAGACCTTTGCAAAAATTTCTTTGTGGGCATGTATATTTCAACCAATTGAATCCAGTTTCgcaaaaaatttcaacttttgaaaATTGTGAAAGATTATCATGGGAACGTTCAACACAAGAAATTCTATTGGGTAAGCTTAAATTTGCTTTGAGGAATCATCAATTGCATGAAGCATTCGAAACTTTTCGTGATTTTAGAAGACTTTATGGTTACCCTGATGTTAACTTATTGAATCAGTTTATTGTTCAGTTGTGTTATTCTTCTAATCATGTTTGGGTGAGAAAATCATGTGATTTAGTTCTGAAAATTGTTGAAGAGAATTCTGGTTTGATTCATGTCGATACATTAACAAAACTTGCTTTGTCTTTAGCTAGAATGCAAATGCCGTCTCCGGCTTCGGTTGTACTTAGGTTGATGCTTGATAAAGGATTTGTGCCATCTATGAATTTATTGTCCTTGATTGTTTTTCATATTGTGAAGACAGAAATTGGAACTTATCTTGTATTTACTTATTTGTATCAAGtttgtgatttttataatagtttGAAGGATAAAAAAGCTCAACGTGCAATTTTTTTGAAGCCGGATACTTTGATATTTAATCTTGTTCTTGATGCTTGTGTGAGGTTTAAGTTGTGTTTGAAAGGACTGTGCTTGATTGAGTTAATAGCGCTGACGGGGACAGTGGCTGATGCACACACAATAGTGATAATTTCGCAGATTTTAGAGATGAATGGTTTGAGAGATGAAATGATGGAATTAAAATGTCATATTGATGGAATTTCTGTTGCCTATGTTCGGCACTATCGTCAGTTCTATGATAGTTTGTTGAGCTTGCACTTTAAATTTAACGACATTGATGCTGCGGTTAAGCTTGTTTTGGATATGAATAGCTCACATAATTGTCACAGTAATTTAGAATGTAGTAATCACTTGCAAAAGCCATGCTTTATTGCTATTGGATCGCCTAATCTTAAGAATGCATTAAAGATACATACAGAGCCTGAACTACTGCAGAAGGACTCTGTGCTTAAATTGGAAGGTAGNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAGAAAGACGGTAGAATTAGTGAACTTTCAAAACTTTTACTAAGCATTCAAGGGGAACAATATTCAGTGGCAGGATCCAGTTTGTCTTCTGATGTGATTAGTGCTTGTATTAAGATGGGATGGCTTGAGTCTGCTCATGACATTTTGGACGACTTAGAGGCTGTTGAGTCTCCAATCGGCCGCGATATGTATATGTTACTGTTATCAGCATATCAGAAGGAGGGAATGCAAAGAGAAGCTAAGGCACTGCttaaacaaatgaaaaagatTAATTTGCACAAAGAATTGTCTGATGATGATGCTATTGATAAACATATTATTTACGAAGAAAATTCAAATTCGGTTGGTAAATCAGATTTGTCTGTCGCCTTGGCTCAAGTGTTGAAAGATGAAAATCAGACAGATGTTCCTTTGGTGTATAACTTTAATTCTTCGATCTTCTTTTTCTGCAAGGCAAGAATGATGGATGATGCACTTAGAACTTATAGAAGAATGTGTGAAATGAAAATTCAACCGGCAAACCAAACTTTTGCTCATCTCGTGCGTGGATATTATTCTCTTGGTATGTACCGCGAGATTACATACTTGTGGGGAGACATCAAGAGATTCATGAAGAACAGCTATTTGGTTGTAGATAGAGATCTATACGAATTACTGCTGCTAAACTTCATTCAAGGTGGTTACTTTGAAAGAGTGATGGAGGTCATTGGCCATATGAATGACCGTAACATGTATACCGACAAGTTGATGTACAAAAGCGAGTTCCTTAGACTTCATAAGAATCTTTATAGGAGTTTAAAAGCATCAGATACAAGAACAGAAGCACAAAGCAAAAGGCTTGAGCATGTTCGGGAATTTAGGAAATGGGCTGAAGTTAAAAAAACAGCTGGTGTTTTTTCGGAAAATGCATTGCTCGGTGCCATGTACTATTTGATCTGGTATATGCTTGCTAGCCATATAACAGGTTCTGTGTGGTACTTATTATCCATAGAACGGAACGACACATGCTGGACGAATGCATGTAAAGCAGTTGAAGGGTGTAATACACATTTTTTGTATTGTGGAAGTTCAAGTAAGCATATACGAGGGTATGAAAGTTGGAGAAATGTCAGTGAATCTGTTCTTAAAAGTAAATGCTTTGTTGAAGATGATAGCTCAGCTTTTAATTATGGAATCTTCTCTCAAGCTATTGAGTCTGGTATTGTTTCTTCCGTACAAGTCTTTCCCAAATTTTGTTACTGTCTATGGTGGGGTCTTCAGAATTTGAGTACACTTGGTCAGGGGCTTCTAACTAGTACCTACCCTGGAGAGGTTATGTTTTCCATAGTAATAGCTATTATGGGGCTTGtgcttttttctcttttgattgGAAACATGCAGACCTACCTTAATTCAATGTCGGTTCGTCTGGAGGAAATGAGGATCAAAAGGCGTGACTCTGAGCAGAGAAAACGCAGAaaggaggaggaagaagaataTTTTGAATCTGATTATTATGGAGGAAGTGATGATCCTTCTGAGGCTTTGGTTCCGCATGCTAAAAGTTCGTCAAAATTTGGATTCAATACAACAATCTATGCTTCTCGGTTTGCTGCTAATCTTCGTGGTCATAGACATCGACTTCCAAGTTCGAGCGACCTGATGAGCATTCCAAAGCCCTCAGAACCTGACTTCAGTGCTCTTGATAATCAAGAGTGA 2850 0.3586 MGTQHGIMVLPFTKFILLQNPFLKKVRPLQKFLCGHVYFNQLNPVSQKISTFENCERLSWERSTQEILLGKLKFALRNHQLHEAFETFRDFRRLYGYPDVNLLNQFIVQLCYSSNHVWVRKSCDLVLKIVEENSGLIHVDTLTKLALSLARMQMPSPASVVLRLMLDKGFVPSMNLLSLIVFHIVKTEIGTYLVFTYLYQVCDFYNSLKDKKAQRAIFLKPDTLIFNLVLDACVRFKLCLKGLCLIELIALTGTVADAHTIVIISQILEMNGLRDEMMELKCHIDGISVAYVRHYRQFYDSLLSLHFKFNDIDAAVKLVLDMNSSHNCHSNLECSNHLQKPCFIAIGSPNLKNALKIHTEPELLQKDSVLKLEGXXXXXXXXXXKKDGRISELSKLLLSIQGEQYSVAGSSLSSDVISACIKMGWLESAHDILDDLEAVESPIGRDMYMLLLSAYQKEGMQREAKALLKQMKKINLHKELSDDDAIDKHIIYEENSNSVGKSDLSVALAQVLKDENQTDVPLVYNFNSSIFFFCKARMMDDALRTYRRMCEMKIQPANQTFAHLVRGYYSLGMYREITYLWGDIKRFMKNSYLVVDRDLYELLLLNFIQGGYFERVMEVIGHMNDRNMYTDKLMYKSEFLRLHKNLYRSLKASDTRTEAQSKRLEHVREFRKWAEVKKTAGVFSENALLGAMYYLIWYMLASHITGSVWYLLSIERNDTCWTNACKAVEGCNTHFLYCGSSSKHIRGYESWRNVSESVLKSKCFVEDDSSAFNYGIFSQAIESGIVSSVQVFPKFCYCLWWGLQNLSTLGQGLLTSTYPGEVMFSIVIAIMGLVLFSLLIGNMQTYLNSMSVRLEEMRIKRRDSEQRKRRKEEEEEYFESDYYGGSDDPSEALVPHAKSSSKFGFNTTIYASRFAANLRGHRHRLPSSSDLMSIPKPSEPDFSALDNQE 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03428 949 Pfam PPR repeat 533 553 IPR002885 -
Tsu03g03428 949 Pfam PPR repeat 447 475 IPR002885 -
Tsu03g03428 949 Pfam Ion transport protein 685 853 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu03g03428 949 MobiDBLite consensus disorder prediction 924 949 - -
Tsu03g03428 949 PANTHER OS07G0495300 PROTEIN 35 676 - -
Tsu03g03428 949 Coils Coil 457 477 - -
Tsu03g03428 949 SUPERFAMILY Voltage-gated potassium channels 664 868 - -
Tsu03g03428 949 Coils Coil 847 874 - -
Tsu03g03428 949 Gene3D - 771 881 - -
Tsu03g03428 949 Gene3D Tetratricopeptide repeat domain 410 687 IPR011990 GO:0005515
Tsu03g03428 949 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 522 556 IPR002885 -
Tsu03g03428 949 Gene3D Tetratricopeptide repeat domain 66 346 IPR011990 GO:0005515
Tsu03g03428 949 PANTHER BNAC05G43320D PROTEIN 35 676 - -
Tsu03g03428 949 TIGRFAM PPR: pentatricopeptide repeat domain 533 556 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03428 Tsu-Chr3 47230700 47235159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03428 905 949 Ion Channels AT1G19780 55.319 2.49e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03428 - - cam:101501642 1050.04