Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03422 ATGGGTTGCATTTATTCAAGAGTTTGCATAGGTGAAACTTGTAAAGGTTCAAGCATCAATGGTGACCCAATTTCAAGACATGAACTTCAACAAGCTTTTTCACCTTCTTCTTCAGGTGAAATTAGAGACCAATTGAATCAATTAAGCTTAACAAGAGATTCAGAAGCTGGTATTAGAAGATTAGCTAGGGTTTCATCTCAATTTTTGCCACCAGATGGTTCAAGAATTGTTAGAGTTCCTTCAAGTAATTATGAATTACGTTATTCTTATCTTTCTCAACGAGGTTATTATCCTGATGCTCTTGATAAAGCAAATCAAGATAGTTTTTGTATTCATACACCTTTTGGAAATGATGTTAATGATCATTTTTTCGGTGTTTTCGATGGTCATGGTGAATATGGAGCCGAATGTTCGCAATTTGTTAAGCGTAGGATTTGTGAGAATTTATTAAGGAATTCTAAGTTTAGTGTTGATCCTGTTGAGGCTTGTCATTCGGCTTTTTTAGCAACGAATTCGCAGTTACATGGTGATATTTTAGATGATAGTATGAGTGGAACTACGGCCATAACGATTTTGGTTAGAGGGAAAACGGTTTATGTAGCGAATTGTGGTGATTCGAGGGCCGTTATAGCTGAGAAGAAAGGGAAAGATGGTGATGTTGTTGCAGTTGATTTGTCTATTGATCAGACACCTTATAGAGTTGATGAGTTAGAAAGAGTGAAACTTTGTGGTGCTAGAGTTCTTACTTTGGATCAAATTGAAGGGTTAAAGAATCCTGATGTTCAGTGTTGGGGTACTGATGAAGAAGCTGATGATGGTGATCCTCCTAGGTTGTGGATTCCAAATGGGATGTATCCCGGTACTGCTTTTACAAGAAGTATCGGTGATTCTATTGCCGAGACTATTGGTGTTGTTGCTAATCCTGAGATTGTTAGTTTTGAACTCACACCTAATCATCCATTTTTTGTTATTGCTAGTGATGGTGTTTTCGAGTTTCTTTCTAGCCAGACTGTTGTTGATATGGTTGCAAAATTCAAAGATCCGCGTGATGCTTGTGCTGCGATAGTGGCAGAATCTTATCGACTTTGGCTACAGTATGAGACTCGTACAGACGATATTACAGTCATCATTGTGCATATAAATGGGCTAAATGAAACCCCTGTTGCTCACTCAGCAAGTTCTCGTGATGTTTTACGAACCTCTGTCCCTCAAGTTATTGAGGTGACAGGTTCAGAATCTCCTTCTACTTTTGGCTGGACTGCTAGGAATAATCGTGTAAGGCAAGAGTTGTCAAGGGCACGCATCCGAGCAATTGAAAATTCCCTCGAGAATGGACAAGGTTGGGTTCCTCCATCATCAGCCCACAGAAAGACATGGGAGGAAGAAGTAAATcccaaatcatttttttcttttcatttttgttttttgaaattgaTAACAACATTGGCGTTTAAGTATGAGTTCATAGATTGCAAAGTTCACGAACTGCAAATCTTGATGGTGGTTCATCTTCATATGCAACAGGCACACATAGAGCAGGCTTTGAATGATCATTTCCTCTTCCGTAAACTCACCGAATCTCAATGTCATGTTTTATTGGATTGCATGCAAAGAGTTGAAATCGAACCTGGGGATATTATAGTCAAACAGGGCGGTGAAAGTGACTGTTTTTATGTCGTTGGAAGCGGAGAATTTGAAGTCCTGGCAACTCAGGAAGAAAAAGACGGGGAGGTACCTAGGGTTTTGCAGCGCTACACAGCCGAAAAACTATCGTGCTTTGGAGAACTTGCTCTGATGTACAACAAACCACTCCAGGCTTCTGTACGTGCGGTAACAAAAGGAACTCTTTGGGCTTTAAAGCGAGAAGATTTTCGAGGGATTTTGATGTCAGAATTCTCTAACTTATCATCGTTAAAGTTACTTCGTTCTGTAGATCTCCTCTCAAGATTGTCAATTCTACAACTTAGTCAGATTTCTGACTGCCTTTCTGAAGTTACCTTCTCAAGCGGACAGACAATAATCGATAAAAATGAAGTCCTTGCATTGTACATTATCCAAAAGGGACGTGTAAAATTAACTTTCGATGCTGATTTATTGACAAGTCCAAACACATTGAGCCTCAAGTCTGACATCGAAAATGAGGACGATGATGTACCGAGCGGAACAGAACTGTCGATAGAGAAGCCCGAGGGAAGCTATTTCGGTGAATGGTCGCTTCTTGATGAACAAATTGGTTCCTTAACTGCTGTTGCTGAGGAAGATGTTGTATGTGCTTTACTAAcaaaggacaaatttgaatCAGTTATTGGCTCCTTACAAAAGATTTCTCAGGAAGATCACAAGTTGAGGGACAATTCCAAGGAATGGACTAGAAACTTTGAACTCTCATCCCTTGATAAAGTGCAGCTCTCGGATTTGGAGTGGAGAAAGACTATATATTCTACTGATTGTTCTGATACTGGACTTGCAAATTTAAGAGACTCAGAAAATGTGCTTACTTTGAAGAAATTTTCCAAGCCAAAAGTGAAAAAGCTGGGAAAGGAATCACAAGTCTTGAAAGAGAAAGATTTGATTAAGTGTATGAGCTCTTCAGCTTGTGTACCACAAGTTTTATGCACCTTTGCCGACCACATGTATGCTGGAATACTGCTAAATACTCGTCTTGCCTGCCCTTTATCTTCCATACTTTCAAGTCCTTTTAGCGAATCAGCAGCACAATTTTGCGCTGCTTCTGTTGTTGCAGCATTAGAAGACTTGCACAAGAATGGTGTTCTCTATAGAGGTGTCTCGCGTGATGTTTTGATGTTGGATCAAACTGGACAGATACAGCTGGTGGACTTCAGATTTGGAAAGAAGCTATCTGATGAGAGAACATACACAATTTGTGGGATGGCAGATTCGCTAGCTCCGGAGATTGTTTTGGGAAAAGGCCACGGTTTCCCTGCGGACTgGTGGGCGTTGGgagttttagtatattttatattaaaggGCGAGATGCCATTTGGATCATGGAGAGAAAACGAACTTGATACAGTTGCCAAAATTgcaaaaaggaaattaaattttccAGACACTTTTAGCCCTGAAGCTATTGATCTCATCTCCAAGTTACTTGATGTGGAAGAAAATACTAGACTTGGTAGCCAAGGTCCTGATTTTGTCAAGAGTCACTCGTGGTTTAATGGTATCGACTGGGAAGCGCTTAGACACCACACTTTTCCAGTTCCTCCAGAAATTATTTCTCGCATAACACAATACTTGGAAGTTCATTATGAGGATTCTTCTGCTTCTATGGAGTCTCCATTAGAGGAAGTAGAAGAACTTAATGTGCCTGAATGGCTTGAAGATTGGTAG 3354 0.3915 MGCIYSRVCIGETCKGSSINGDPISRHELQQAFSPSSSGEIRDQLNQLSLTRDSEAGIRRLARVSSQFLPPDGSRIVRVPSSNYELRYSYLSQRGYYPDALDKANQDSFCIHTPFGNDVNDHFFGVFDGHGEYGAECSQFVKRRICENLLRNSKFSVDPVEACHSAFLATNSQLHGDILDDSMSGTTAITILVRGKTVYVANCGDSRAVIAEKKGKDGDVVAVDLSIDQTPYRVDELERVKLCGARVLTLDQIEGLKNPDVQCWGTDEEADDGDPPRLWIPNGMYPGTAFTRSIGDSIAETIGVVANPEIVSFELTPNHPFFVIASDGVFEFLSSQTVVDMVAKFKDPRDACAAIVAESYRLWLQYETRTDDITVIIVHINGLNETPVAHSASSRDVLRTSVPQVIEVTGSESPSTFGWTARNNRVRQELSRARIRAIENSLENGQGWVPPSSAHRKTWEEEVNPKSFFSFHFCFLKLITTLAFKYEFIDCKVHELQILMVVHLHMQQAHIEQALNDHFLFRKLTESQCHVLLDCMQRVEIEPGDIIVKQGGESDCFYVVGSGEFEVLATQEEKDGEVPRVLQRYTAEKLSCFGELALMYNKPLQASVRAVTKGTLWALKREDFRGILMSEFSNLSSLKLLRSVDLLSRLSILQLSQISDCLSEVTFSSGQTIIDKNEVLALYIIQKGRVKLTFDADLLTSPNTLSLKSDIENEDDDVPSGTELSIEKPEGSYFGEWSLLDEQIGSLTAVAEEDVVCALLTKDKFESVIGSLQKISQEDHKLRDNSKEWTRNFELSSLDKVQLSDLEWRKTIYSTDCSDTGLANLRDSENVLTLKKFSKPKVKKLGKESQVLKEKDLIKCMSSSACVPQVLCTFADHMYAGILLNTRLACPLSSILSSPFSESAAQFCAASVVAALEDLHKNGVLYRGVSRDVLMLDQTGQIQLVDFRFGKKLSDERTYTICGMADSLAPEIVLGKGHGFPADWWALGVLVYFILKGEMPFGSWRENELDTVAKIAKRKLNFPDTFSPEAIDLISKLLDVEENTRLGSQGPDFVKSHSWFNGIDWEALRHHTFPVPPEIISRITQYLEVHYEDSSASMESPLEEVEELNVPEWLEDW 1117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03422 1117 PRINTS cAMP-dependent protein kinase signature 556 570 - -
Tsu03g03422 1117 PRINTS cAMP-dependent protein kinase signature 541 555 - -
Tsu03g03422 1117 PRINTS cAMP-dependent protein kinase signature 765 777 - -
Tsu03g03422 1117 PRINTS cAMP-dependent protein kinase signature 591 600 - -
Tsu03g03422 1117 Gene3D Jelly Rolls 503 634 IPR014710 -
Tsu03g03422 1117 CDD CAP_ED 646 770 IPR000595 -
Tsu03g03422 1117 SUPERFAMILY cAMP-binding domain-like 638 780 IPR018490 -
Tsu03g03422 1117 ProSiteProfiles PPM-type phosphatase domain profile. 87 380 IPR001932 -
Tsu03g03422 1117 Pfam Cyclic nucleotide-binding domain 539 630 IPR000595 -
Tsu03g03422 1117 Pfam Cyclic nucleotide-binding domain 665 769 IPR000595 -
Tsu03g03422 1117 ProSitePatterns PPM-type phosphatase domain signature. 123 131 IPR000222 GO:0043169
Tsu03g03422 1117 Gene3D Jelly Rolls 635 788 IPR014710 -
Tsu03g03422 1117 PANTHER PROTEIN PHOSPHATASE 2C AND CYCLIC NUCLEOTIDE-BINDING/KINASE DOMAIN-CONTAINING PROTEIN 34 1117 - -
Tsu03g03422 1117 Gene3D Phosphorylase Kinase; domain 1 810 886 - -
Tsu03g03422 1117 ProSiteProfiles cAMP/cGMP binding motif profile. 646 770 IPR000595 -
Tsu03g03422 1117 PANTHER CYCLIC NUCLEOTIDE-DEPENDENT PROTEIN KINASE 34 1117 - -
Tsu03g03422 1117 SMART PP2C_4 79 378 IPR001932 -
Tsu03g03422 1117 SUPERFAMILY PP2C-like 72 383 IPR036457 -
Tsu03g03422 1117 CDD CAP_ED 520 629 IPR000595 -
Tsu03g03422 1117 Pfam Protein phosphatase 2C 114 359 IPR001932 -
Tsu03g03422 1117 Gene3D Transferase(Phosphotransferase) domain 1 887 1076 - -
Tsu03g03422 1117 ProSiteProfiles cAMP/cGMP binding motif profile. 520 629 IPR000595 -
Tsu03g03422 1117 SMART cnmp_10 520 643 IPR000595 -
Tsu03g03422 1117 SMART cnmp_10 646 784 IPR000595 -
Tsu03g03422 1117 SMART serkin_6 806 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03422 1117 ProSiteProfiles Protein kinase domain profile. 806 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03422 1117 SUPERFAMILY cAMP-binding domain-like 506 630 IPR018490 -
Tsu03g03422 1117 CDD PP2Cc 103 380 IPR001932 -
Tsu03g03422 1117 Pfam Protein kinase domain 826 1060 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03422 1117 SUPERFAMILY Protein kinase-like (PK-like) 795 1090 IPR011009 -
Tsu03g03422 1117 Gene3D - 77 381 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03422 Tsu-Chr3 47161852 47169827 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03422 1 1117 PP2C-type Phosphatase Gene Family AT2G20050 64.062 0.0 1453
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_PKA-PKG Tsu03g03422 PP2C 1.6e-34 CL0238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03422 - - gmx:100799821 1785.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03422 03 47161852 47169827 Tsu03g03422 03 47161852 47169827 ECH