Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03420 ATGATGAATCAACTTGGTAGTAATCTTTTgcttctctcaatttttttcttctatcatGTTAGAGCACAAACACAAACATCATCTTCACAAGATGTTGTTTCAAATTTCCAACCAAGTCTTGTTGTTGTCATAGCAATCCTTGGTCTCATGTTTTCATTAACAtttattcttcttatttttgCCAAAGTGTGTCATAGGAGACAATTAAGTCCTCTTAGTGATGATCCAAATAGTCAATTTCCAACACTCATTAGATCAAGGTCAAGATTTTCAGGAATTGACAAAACAGCAATAGAATCACttccatttttcaaattttcttctcTCAAAGGTTCAAAAGAAGGTTTGGAATGTTCAATATGTTTGTCAAAGTTTGAAGACATAGAAATTTTAAGATTGTTACCAAAATGTAAACATGCTTTTCATATTGATTGTATTGATCATTGGCTTGAAAAACATTCAAGTTGTCCTATTTGTAGGCACAAAGTCAACATTGAAGATCAAGCAACCTTTGCATATTCAAATAGTTTAAGGATGTTGGTAAGTGAAGAATCAAACATAGAGATTTTTGTccaaagagaagaagaaaatcaacATGGTTCATCAAGATTTAGTATTGGAAGCAGCTTTAGAAAAATTGGAAAAGGAAATACTAAAGAAGAAGAATTGCTTATACAAAAAggaacaaaagaagaaagcgacataattgaatgtaatcacagGTGTCAGTGTCGTGCTGATACTGGACACGCCATCAATCAGAAGTGTCAGTGTTACAAAGCTTATCACAAACACAATCATCAGATTACTATGTCTGATGTTGTGTTTAAGCATAGATGGAGCAATGTTAGTTCTTCTGATCTTATGTTTTTGAATTCAGAGATGATTAATGCTACATCAAGTAACAGATTCAACAACATGGAATCAAAAATTTCATTTGAGAGCAAAGTTAATGGAAATTTTAGTCATGCAGAAAATTATGTGAATAATCATCATGATGGTGAGAAAAGATCAGTGTCAGAAATCACTGCTGTTTCTAGATTTAGAGATTTAGATATGAAGAAAAGGGTGATTGAAGATTCTTCTTTGGTTGAAAATAATCTTAGAGAAGAAAGAATGAGGAAGCTTTGGTTTCCAATTGTAAGAAGAACAGCTGAATGGTTTGTGAATAGAGAAAAAAGGTCTCAACAATCATTTGTAGATGTATAA 1209 0.2878 MMNQLGSNLLLLSIFFFYHVRAQTQTSSSQDVVSNFQPSLVVVIAILGLMFSLTFILLIFAKVCHRRQLSPLSDDPNSQFPTLIRSRSRFSGIDKTAIESLPFFKFSSLKGSKEGLECSICLSKFEDIEILRLLPKCKHAFHIDCIDHWLEKHSSCPICRHKVNIEDQATFAYSNSLRMLVSEESNIEIFVQREEENQHGSSRFSIGSSFRKIGKGNTKEEELLIQKGTKEESDIIECNHRCQCRADTGHAINQKCQCYKAYHKHNHQITMSDVVFKHRWSNVSSSDLMFLNSEMINATSSNRFNNMESKISFESKVNGNFSHAENYVNNHHDGEKRSVSEITAVSRFRDLDMKKRVIEDSSLVENNLREERMRKLWFPIVRRTAEWFVNREKRSQQSFVDV 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03420 402 SMART ring_2 118 159 IPR001841 -
Tsu03g03420 402 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 397 - -
Tsu03g03420 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 169 IPR013083 -
Tsu03g03420 402 ProSiteProfiles Zinc finger RING-type profile. 118 160 IPR001841 -
Tsu03g03420 402 CDD SQR_QFR_TM 9 55 - -
Tsu03g03420 402 Pfam Ring finger domain 117 160 IPR001841 -
Tsu03g03420 402 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 22 397 - -
Tsu03g03420 402 CDD RING-H2_PA-TM-RING 117 160 - -
Tsu03g03420 402 SUPERFAMILY RING/U-box 97 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03420 Tsu-Chr3 47131491 47132699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03420 11 396 C3H Transcription Factor Family AT4G28890 44.321 4.36e-101 305
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03420 K10664 - gmx:100803207 473.396