Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03417 ATGGCTTCTTCTACAATTCGTCCATCGCTTTCTTCTTTCAACAAGTTACCGTCTTTCTCTTCACGCAACCTTTCTCAAAGACTCTCTCTTTTTCATCTTCGTAGCGGTGTTAGATTACTGCCCCAAAATTTTGGTCTTAAAGCATCTAGGTTTTTGAGAAATGATAATAGATGTATGAGAGTGATGGCATCAAGGAACATGTCTCAATCAGCTACACAGGAAAATGCATTAGATTGGGTGAAGCAGGATAAGAGAAGAATGCTTCATGTCGTATATCGTGTTGGAGACTTGGACAAGAGTATAAAATTTTATACAGAGGGCCTAGGAATGAAGGTGCTTAGGAAGCGCGACAGGACGGAGGAGAGATATACAAATGCCTTTCTTGGATATGGCCAAGAGGATGCACACTTCTCTATTGAACTAACATACAATTATGGGATTGAAACGTATGACATTGGAACCGGATTTGGCCATTTTGGTATTGCTATGGATGATATTTCAAGAGTTGTGGACATTGTGAGAGCTAAAGGTGGCATAATAACTAGAGAGCCCGGTCCGGTCAAGGGAGGTGACTCAAATATTGCAGTTATCGAAGACCCTGATGGCTATAAGTTTGAACTTTTGGAAAGGTCACCCTGTCCCGAACCCCTGTGCAAAGTAATGCTTCGGGTGGGTGATCTCGATCGATCCATAAAATTTTATGAGAAGGCTGTGGGTTTGGAGCTTCTTCGTAAACAAGACAATCCAGAATCCAAGTGTACCGTTGCAATAATGGGTTATGGTCCAGAAGAAAAAAGTACTGTTCTGGAGTTGACTTACAACTACGGAGTCACGAAATATGATAAAGGAGATGCATATGCTCAGATTACAATAGGCACGGATGATGTGTACAAAACTGCAGAAGCAATTAAACTTGCTGGAGGGAAGATTACTCATGCCGGACCAGTACCTggctacaaaacaaaaattacatcaTGTGTGGATCCCGATGGTTGGAAAACGGTTTTTGTAGATAATCATGATTTTCGAAAGGAGCTTGAGTAG 1044 0.408 MASSTIRPSLSSFNKLPSFSSRNLSQRLSLFHLRSGVRLLPQNFGLKASRFLRNDNRCMRVMASRNMSQSATQENALDWVKQDKRRMLHVVYRVGDLDKSIKFYTEGLGMKVLRKRDRTEERYTNAFLGYGQEDAHFSIELTYNYGIETYDIGTGFGHFGIAMDDISRVVDIVRAKGGIITREPGPVKGGDSNIAVIEDPDGYKFELLERSPCPEPLCKVMLRVGDLDRSIKFYEKAVGLELLRKQDNPESKCTVAIMGYGPEEKSTVLELTYNYGVTKYDKGDAYAQITIGTDDVYKTAEAIKLAGGKITHAGPVPGYKTKITSCVDPDGWKTVFVDNHDFRKELE 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03417 347 ProSitePatterns Glyoxalase I signature 1. 89 110 IPR018146 GO:0004462|GO:0046872
Tsu03g03417 347 CDD GlxI_Ni 87 208 - -
Tsu03g03417 347 TIGRFAM glyox_I: lactoylglutathione lyase 217 344 IPR004361 GO:0004462|GO:0046872
Tsu03g03417 347 TIGRFAM glyox_I: lactoylglutathione lyase 74 218 IPR004361 GO:0004462|GO:0046872
Tsu03g03417 347 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 86 212 IPR029068 -
Tsu03g03417 347 PANTHER LACTOYLGLUTATHIONE LYASE-LIKE PROTEIN 11 347 - -
Tsu03g03417 347 ProSitePatterns Glyoxalase I signature 2. 153 165 IPR018146 GO:0004462|GO:0046872
Tsu03g03417 347 SUPERFAMILY Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 218 339 IPR029068 -
Tsu03g03417 347 Gene3D - 213 347 IPR029068 -
Tsu03g03417 347 PANTHER LACTOYLGLUTATHIONE LYASE 11 347 - -
Tsu03g03417 347 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 216 339 IPR037523 -
Tsu03g03417 347 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 87 207 IPR004360 -
Tsu03g03417 347 Pfam Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 220 333 IPR004360 -
Tsu03g03417 347 Gene3D - 58 211 IPR029068 -
Tsu03g03417 347 ProSiteProfiles Vicinal oxygen chelate (VOC) domain profile. 86 210 IPR037523 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03417 Tsu-Chr3 47103718 47108845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03417 219 336 Calmodulin-binding Proteins AT1G08110 25.694 2.82e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03417 K01759 - gmx:100802155 548.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03417 03 47103718 47108845 Tsu03g03417 03 47103718 47108845 ECH
Tsu02g00231 02 1954415 1959489 Tsu03g03417 03 47103718 47108845 PCT