Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03414 ATGGATCGCATCATCGGTGACAAGTTCAAATTAGGTCGTAAGATCGGAAGTGGATCCTTCGGTGAAATCTACCTcgcTACTCATATTGATACCTTCGAGATCGTTGCTGTTAAGAtcGAGACTGGTAAAACGAAGCATCCACAATTGCTTTATGAAGCTAAGCTCTATAATATTCTTCAAGGAGGaaTGTTTGATGCAGGTGGCATCCCAAACATAAGATGGAGTGGTGTAGATGGGGAAGACAATGTGCTTGTTATGGATTTGTTGGGGCCTAGTCTCGAGGATCTTTTTGTATACTGCGGAAGAAAGTTCTCCCTCAAAACTGTCTTGATGTTGGCTGATCAAATGATGACCAGAATAGAGTATGTGCATTCTAAAGGATTCCTTCATAGGGATATAAAACCGGATAACTTTCTCATGGGACTTGGTCGGAAGGCAAACCTCGTTTATGTAATTGATTTTGGGCTTGCAAAACGTTATCGGGACTCCACAACCAATCGCCACATCCCCTACAGGGAGAACAAAAACTTAACAGGGACTGCACGGTATGCAAGCTGCAATACTCATCTGGGGATTGAGCAAAGCCGGCGGGATGATTTGGAATCACTGGGGTATGTGCTTTTGTACTTCCTCAGAGGAAGCCTTCCTTGGCAAAACCTAAAGGCTGCGACAAAAAAGCAAAAGTATGAtaaaatatgtgaaaagaaaGTATCAACTCCTATTGAGGTTTTATGCAAATCTCATCCTGTAGAGTTTGCTTCATACTTTCATTACTGTCATTCTTTGACCTTTGATCAGCGACCTGATTATGGATTCTTGAGGCGCCTATTTCGAGAGTTATTTGCTCGAGAAGGTTACAAATTTGATTATGTATTTGATTGGACAATTTTGAAGTACCAACAGTCACAAAAGAGTAGAGCCCAGTCTCACATATCCCCGATTCCTGTAGCGAGCAACAATCGGGCAATGGCCATGGATATTGATAACCAACAAGGGGATGTCTCAGCAGAGCAAATTAAATCAGACAATGCCACTACTTCTGGTGTTAAGTTTCAATTTAAATCATCCGCGGGTAAAAATTTGGCTTCTGAAAATCCTCTTGGCAAGAATatTTTTGGTGAAACAACTATCCCTTCTACTTCGGAGCAGTAA 1152 0.4097 MDRIIGDKFKLGRKIGSGSFGEIYLATHIDTFEIVAVKIETGKTKHPQLLYEAKLYNILQGGMFDAGGIPNIRWSGVDGEDNVLVMDLLGPSLEDLFVYCGRKFSLKTVLMLADQMMTRIEYVHSKGFLHRDIKPDNFLMGLGRKANLVYVIDFGLAKRYRDSTTNRHIPYRENKNLTGTARYASCNTHLGIEQSRRDDLESLGYVLLYFLRGSLPWQNLKAATKKQKYDKICEKKVSTPIEVLCKSHPVEFASYFHYCHSLTFDQRPDYGFLRRLFRELFAREGYKFDYVFDWTILKYQQSQKSRAQSHISPIPVASNNRAMAMDIDNQQGDVSAEQIKSDNATTSGVKFQFKSSAGKNLASENPLGKNIFGETTIPSTSEQ 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03414 383 MobiDBLite consensus disorder prediction 359 383 - -
Tsu03g03414 383 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Tsu03g03414 383 SUPERFAMILY Protein kinase-like (PK-like) 4 294 IPR011009 -
Tsu03g03414 383 ProSiteProfiles Protein kinase domain profile. 9 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03414 383 Pfam Protein kinase domain 10 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03414 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
Tsu03g03414 383 Gene3D Transferase(Phosphotransferase) domain 1 1 348 - -
Tsu03g03414 383 SMART serkin_6 9 281 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03414 383 PANTHER CASEIN KINASE-RELATED 1 381 - -
Tsu03g03414 383 PANTHER CASEIN KINASE 1-LIKE PROTEIN 3 1 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03414 Tsu-Chr3 47091199 47094776 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03414 8 217 MAP Kinase Kinase Kinase AT3G06030 25.688 4.03e-13 68.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Tsu03g03414 Pkinase 1.8e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03414 K08960 - gmx:100805890 669.463
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03414 03 47091199 47094776 Tsu03g03414 03 47091199 47094776 ECH
Tsu02g00227 02 1940809 1943892 Tsu03g03414 03 47091199 47094776 PCT