Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03392 ATGGAAAGTTCTGAGAAATTTTCTCAAAGAAGTAGTAACAATGGCTTGAACCTCAAGGCTACTAAGTTAAGACTTGGTTTACCAGGTTCTGAGTCACCAGAGAGAGATGACGATGATGTTTTTGAGGACAAAAATGTATACCCTTTATGCATGCTTAAGAGTTTAGTATCAGGGGCAAAAAGGGGTTTTTCAGATGCCATTGATGTTGGTTCTAGTAAATGGATTCTCTCTGGAAATGGTGGATCTGAAATTGGTATGAGTAAAGATTGTATAAACAAACAAGGTTCTGTTTTGAAAGAGAAAGTTGAGAAGTCTTCAAATCATTTGAATGAAAAAAAGTCTCAGATAACTTCTTCAGCTGCAAAGGAACAGGTTGTAGGATGGCCACCAATCAGATCTTTTAGGAAGAATTCAATGGCTTCTCAGTCTCAAaagaatgatgatgaagatgatgaagatgtaGAAGCCAAATCTGGATGCCTTTATGTAAAAGTGAGCATGGATGGTGCTCCTTACTTGAGGAAAGTGGACCTCAAATTTTTTAGCACTTACATGGAACTATCTTCTGCATTAGAAAAGATGTTTAGTTGTTTTACAATaaGTCAATTTGGTTCTCATGGAGTTTCTGGTCAAGATAATTTGTGTGAAAGTAGATTGATGGATCTTCTTCATGGTTCAGAATATGTCCTCACCTATGAAGACAAAGATGGTGATTGGATGCTAGTGGGTGATGTTCCATGGAAgATGTTCACTGACTCTTGCAAGAGGTTAAGGATAATGAAAAGCTCTGAAGCAATTGGATTAGCACCAAGAGCCATGGAGAAGTGCAAAAGTCGCAACTAG 843 0.3654 MESSEKFSQRSSNNGLNLKATKLRLGLPGSESPERDDDDVFEDKNVYPLCMLKSLVSGAKRGFSDAIDVGSSKWILSGNGGSEIGMSKDCINKQGSVLKEKVEKSSNHLNEKKSQITSSAAKEQVVGWPPIRSFRKNSMASQSQKNDDEDDEDVEAKSGCLYVKVSMDGAPYLRKVDLKFFSTYMELSSALEKMFSCFTISQFGSHGVSGQDNLCESRLMDLLHGSEYVLTYEDKDGDWMLVGDVPWKMFTDSCKRLRIMKSSEAIGLAPRAMEKCKSRN 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03392 280 MobiDBLite consensus disorder prediction 1 40 - -
Tsu03g03392 280 MobiDBLite consensus disorder prediction 105 124 - -
Tsu03g03392 280 ProSiteProfiles PB1 domain profile. 160 262 IPR000270 GO:0005515
Tsu03g03392 280 MobiDBLite consensus disorder prediction 1 19 - -
Tsu03g03392 280 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 8 273 IPR003311 GO:0005634|GO:0006355
Tsu03g03392 280 Pfam AUX/IAA family 21 271 IPR033389 -
Tsu03g03392 280 Gene3D - 154 274 - -
Tsu03g03392 280 PANTHER AUXIN-RESPONSIVE PROTEIN IAA27 8 273 - -
Tsu03g03392 280 SUPERFAMILY CAD & PB1 domains 158 261 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03392 Tsu-Chr3 46766048 46769984 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03392 163 270 B3 DNA Binding Superfamily AT4G23980 30.556 8.42e-08 51.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Tsu03g03392 AUX_IAA 2.3e-89 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03392 K14484 - gmx:100803754 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03392 03 46766048 46769984 Tsu03g03392 03 46766048 46769984 ECH
Tsu02g00221 02 1917686 1920464 Tsu03g03392 03 46766048 46769984 PCT