Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03388 ATGAATAGAGGTGTTGTGCAAAGTTCACCAGTGCAACAAATGATGGCTAGTAACCCTAATTGGTGGAACATCAATATCAATAACATGAGGCCTCCATCTCCACAACCTTCTCCTAATTTCTTTTCAACTCCTTCTAATTTTCTCATCCCTAATTATACACCaaattcttcttctcttccttttCCTTCTTGGCAAGACAATCATCAAGAGCTTCCTGAATCATGGAGCCAACTACTCATgaGTGGAATTGTGGGTGAGGAAGATAGGATTGGTATGagccaatttcaaaatcaaatgcTAATAAGTCAAGCTCCAAATGCTTCTCTTGTTGATGTTAAACAAGAAAGTTCAGGAAATAGCTATGCATATGGACATGGAAATGAAGAACTTAGTTCATGTGTGACAAGTTTCAACACAAACAACATGTTGGATTTttctaacaataataataatattgaagtGAGGCATCCACCACAAGATCGATCTTCTGAGTGCAACAGCAGTGCATCTGGTGGGGCTATGAAAAAAGCTAGGGTTCAACAAGCTACAACTCAAACTACCTTCAAGGTTAGGAAGGAGAAGTTAGGTGATAGAATTACTGCCCTTCATCAGCTTGTTTCCCCATTTGGAAAgACTGACACAGCCTCTGTCTTGTTAGAAGCTATTGGTTATATCAGATTCCTTCAGAGTCAAATTGAGGCTCTTAGCTTACCATACTTGAACAATGGATCAGGAAACACAAGGCAACAACATTCAGTTCAAGGAGAGAAGAATTGTTTATTCCCTGAAGACCCTGGTCAGCTGTTAAATGAAAATAGCTTGAAGAGGAAAGCAGTTGAAGAGgtttcTCAACAAGAACCAAAGAAGGACCTAAAGAGCAGAGGGCTATGTCTTGTTCCAGTTTCATGCACACTACAAGTTGGGAGTGACAATGGAGCTGATTATTGGGCACCTGCCCTTGGAGGAGGCTTTCAGTAA 978 0.3793 MNRGVVQSSPVQQMMASNPNWWNININNMRPPSPQPSPNFFSTPSNFLIPNYTPNSSSLPFPSWQDNHQELPESWSQLLMSGIVGEEDRIGMSQFQNQMLISQAPNASLVDVKQESSGNSYAYGHGNEELSSCVTSFNTNNMLDFSNNNNNIEVRHPPQDRSSECNSSASGGAMKKARVQQATTQTTFKVRKEKLGDRITALHQLVSPFGKTDTASVLLEAIGYIRFLQSQIEALSLPYLNNGSGNTRQQHSVQGEKNCLFPEDPGQLLNENSLKRKAVEEVSQQEPKKDLKSRGLCLVPVSCTLQVGSDNGADYWAPALGGGFQ 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03388 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 179 228 IPR011598 GO:0046983
Tsu03g03388 325 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 17 311 - -
Tsu03g03388 325 PANTHER OS05G0228400 PROTEIN 17 311 - -
Tsu03g03388 325 CDD bHLH_AtbHLH_like 187 236 IPR045239 -
Tsu03g03388 325 Gene3D - 181 242 IPR036638 GO:0046983
Tsu03g03388 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 189 239 IPR036638 GO:0046983
Tsu03g03388 325 MobiDBLite consensus disorder prediction 153 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03388 Tsu-Chr3 46682767 46689554 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03388 1 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G29100 43.391 3.26e-66 210
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03388 - - gmx:100786555 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03388 03 46682767 46689554 Tsu03g03388 03 46682767 46689554 ECH
Tsu02g00217 02 1874790 1878860 Tsu03g03388 03 46682767 46689554 PCT