Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03377 ATGGATCCTCCAACAACGAGTTGGAGCATCCATACCCGACCCGAAATAACAACCAAATACGAAATCCTCAACCACATCAGCTCCGGTTCCTACGCCGACGTCTACCGTGGCCGTCGTATCTCCGACGGAACAACAGTCGCACTGAAAGAAGTCCACGATCACCAATCAGCATCAAGAGAAATCGACGCTTTGAAAATCCTTCGGGGCTCCGAAAACGTTGTTTTTATGCACGAGTTTTTCTGGCGAGAAGATGAAGACGCCGTAATTGTTCTCGAGTTTCTGAGAACCGATCTTGCCGCTGTGATTAGAGGTGCCGGAAATGAGGGGATTGATGGTGGTGAGGTCAAAGGGTTGTTGATGCAGATGGTTAGTGGGGTCCACGCTTGTCATCGGAATAGGATTGTTCATAGAGACTTGAAGCCGGAAAATTTCTTGATTTCGGATAATGGGGTTGTTAAATTAGCAGATTTTGGACAGGCAAGGATACTTATGGAGTCGAGATTTGATGCATCAAATCATGAAAGTTCATCACAACATCTTCATGATGCTTTTCCCGTATCAGACAACTCAAACCAAACTGAATTTGAAAATCAAGAGGAGGAAGAGGAAAAAATGAGTCATGATGAATATTTTAGAGTGTTAGATGAGCTGAAAATTAAGAGCCACACATACGACACTGATGATAAGGACACAAACACGCACGACGGTAACAACTCGTGCCTTGCAACATGCACAAGTAGCGATAACGACAATGATGCTTGGAAGAATTCTTTGCCGTATGAAGGAGACGAAGAAGGAGAAAATGAAGAACATGGTTTTCTCACATCATGTGTTGGAACTAGATGGTTTAGGGCTCCGGAACTACTCTATGGATCAACTAATTATGGTTTAGAGGTTGATCTTTGGTCATTAGGATGTGTTTTTGCCGAGTTGTTAACATTGAAACCTTTGTTTCCTGGAACAGGTGATATTGATCAAATTAGTAGAATCATTAGTGTTTTGGGTAATCTTGATGAAGAAGCTTGGAATGGTTGTTCTAAACTTCCTGATTACGGAACAATTTCTTTTACTAAGGTGGAAAACCCTATTGGTCTTGAAACATGCATGCCAAATTGTTTGCATGATGAAGTTTCTTTGGTGAAAAAATTGGTTTGTTATGATCCAGCTAGGAGAGTCACTGCAATGGAGTTACTTCATGATAAGTACTTCTCTGAAGAACCACTTCCAGTTTCTGTTACTCAGCTACGGGTTCCTCCTATAGCCAGAAGTGAACAAGACTAG 1281 0.42 MDPPTTSWSIHTRPEITTKYEILNHISSGSYADVYRGRRISDGTTVALKEVHDHQSASREIDALKILRGSENVVFMHEFFWREDEDAVIVLEFLRTDLAAVIRGAGNEGIDGGEVKGLLMQMVSGVHACHRNRIVHRDLKPENFLISDNGVVKLADFGQARILMESRFDASNHESSSQHLHDAFPVSDNSNQTEFENQEEEEEKMSHDEYFRVLDELKIKSHTYDTDDKDTNTHDGNNSCLATCTSSDNDNDAWKNSLPYEGDEEGENEEHGFLTSCVGTRWFRAPELLYGSTNYGLEVDLWSLGCVFAELLTLKPLFPGTGDIDQISRIISVLGNLDEEAWNGCSKLPDYGTISFTKVENPIGLETCMPNCLHDEVSLVKKLVCYDPARRVTAMELLHDKYFSEEPLPVSVTQLRVPPIARSEQD 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03377 426 PANTHER CELL DIVISION PROTEIN KINASE 17 419 - -
Tsu03g03377 426 Gene3D Transferase(Phosphotransferase) domain 1 11 227 - -
Tsu03g03377 426 MobiDBLite consensus disorder prediction 174 193 - -
Tsu03g03377 426 MobiDBLite consensus disorder prediction 174 206 - -
Tsu03g03377 426 Gene3D Transferase(Phosphotransferase) domain 1 267 406 - -
Tsu03g03377 426 ProSiteProfiles Protein kinase domain profile. 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03377 426 PANTHER CYCLIN-DEPENDENT KINASE 10 17 419 - -
Tsu03g03377 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 134 146 IPR008271 GO:0004672|GO:0006468
Tsu03g03377 426 SMART serkin_6 20 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03377 426 Pfam Protein kinase domain 271 403 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03377 426 Pfam Protein kinase domain 20 167 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03377 426 SUPERFAMILY Protein kinase-like (PK-like) 12 409 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03377 Tsu-Chr3 46560140 46562946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03377 4 419 Core Cell Cycle Gene Families AT4G28980 61.432 0.0 537
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-CCRK Tsu03g03377 Pkinase 2.1e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03377 - - mtr:MTR_8g103240 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03377 03 46560140 46562946 Tsu03g03377 03 46560140 46562946 ECH
Tsu02g00213 02 1851549 1854179 Tsu03g03377 03 46560140 46562946 PCT