Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03375 atgaaattACCTTTCATCAACTTCAAAACCATAATCACTACTACCCTCCTCTTCTTTTCCATCTCCCTCCATAATGTTGCACTAGAGACAGGTGATGATGCTGCTAGTGAGGTTGATGCTCTACTAACCTGGAAAGGTAGTCTGGACAAACAAAGCCAACATATCTTAGCTTCATGGCAGCCAAATCACCCTCCTTGCAGCAGCGGCGGTAATTGGTCTGGAATTTCGTGTAATGAAGCTCGAAGAGTCGAAACTATAGATCTTGATAGTTATGGTTTAAGAGGTACACTTCATGATTTCACCTTCTCATCCTTTAAACATCTCATAGAAATCTCCCTTGGTAATAATTCACTGTATGGAACCATTCCCTCTAACATAAGCATGTTATCCAAACTAGGCTACCTTGATTTACGATATAACAATTTCTCTGGATCAATCCCACTTGGCATATGCTTCCTAACCAACCTAAAAATTCTTAGCCTCTACGAAAACAATATATCTGGCACTATCCCCAAAGAAATCGGAAGCAGCCTCGTCAAACTGACTTATCTCGATTTAAGTAGAAACGCCTTAACAGGTGTAGTCCCGGATTCTATTGGTAACTTAACGGAATTAACAGTTCTTACACTTTCCTTCAATCAACTATTTGGATTTATTCCTTCATCCATTGGAAACTTGATTAATCTAGAAAAGCTTCAGCTATATGGCAATCAACTTAATGGTTCAATTCCTCAAAGTGTTGGTAGGTTGACATCTTTGGTTCTTCTTGGATTATCAACCAACAATTTCAGTGGTCCGGTACCTTCTTCCATCGGCAATTTACTCAAACTCGAGACGTTATACCTGTATGAAAATCAGTTATCTGGTTCAATTCCTAACACTATTGGTAGGCTAACATCTTTAGTTGATCTTAAATTATCAGTTAACAATTTGAGTGGTCCGATACCTTCTTCCATCGGCAATTTAGTGAAATTACAGATCTTATAcctaaatcaaaatcaattaactGGTTCAATACCCTCTTCCTTTGGAAATTTAGTGAAATTGGAGCAATTATATCTAGATCATAATCAATTATCTGGTTCAATCCCCCGACAATTAAATAACTTGatacattttaaatatttgCAACTTAGTGAAAACAATTTTTCTGGTTCTTTACCGGATAACTTATGTCTCGGTGGAAAACTTACTAAGTTTACTGCACAGCGAAATCAATTTACGGGCAGACTTCCTATGAGCTTAAAAAATTGTACTAGTCTCGAAAGAGTTCGCCTTGAAATGAACCAATTATCTGGAGACTTAGACCTTGGAATATATCCTCACTTGGATTACATTGATCTAAGTCATAATAACTTTTCTGGCACACTATCATCTAACTGGGGGAAATGTAAAAGTCTGACAAGCTTGAAGatctcaaacaacaaaattgGTGGGAGATTACCTAAAAACTTTGGAGAAGCTTCTCAAATTCAAATGCTTGATCTTGGTTCTAATAATTTGTTCGGAGAAATTCCAATTTCTTTCGCAAATATGACTTCTTTATTCAATCTCAACTTAGAAGACAACATGCTGTCTGGAGTTATTCCGAACGAAATTAGAATGCTCTCCGGCCTTTCTTCTCTCAACCTAGCATCAAACAATTTGAGTGGCATAATTCCTCAAGATATTGGACAGTGTAGAAACCTCATGACATTGAATCTCAGTTTTAACTCTTTTGGTGCAAATATTCCTTCACAAATAGGAAATATACGCTCCCTTCAAAATCTTGATTTGAGTCATAATCAGTTGAGTGGTGAAGTTCCTCAAGAATTCGGGCAACTTGTTGTCTTGGAAAGTCTAAGGCTTTCTAACAATAACATATCAGGTCTTTTGCCATCTACTCTTGAGAATTGTATAAGTTTGACTTCAATAGATATATCAAACAATGAGTTTGAAGGTCCACTGCCTAATATTCGAGCTTTTCAAAATGCTACATCCGATTCGGTGAAGAATAATAAAGGTCTTTGTGGACATATTGATGGTCTAACTCCATGTTTTTCAAAACACGGTCAAAGGAAGAAAAGCTCAAAAGTCGTGAGGTTGATCGCAGTGCTCGTAGGAATCTTTGTTGTGATTGTCGTCCTAGTTGGAATTTTTATGTGTGCCcgaaaatggaagaaaaaatctATGACAATTAGGGAGCAGATTAATCCAATAGAAGATTTGCTTTCAATTTGGAGCTTTGATGGGAAAATGGTGTATGAGAATATAATTGAAGCAACCGGAGACTTCAATTCTGAATATTGCATCGGGCAGGGAGGATATGGAAGTGTTTATAGGGCGGAGTTATCAACCGGTCAAGTTGTTGCGGTGAAAAGACTCCACAACTCTGAAGATCTTTTGAAGTCGTCTAAAATCGAGAAAAGCTTCACATCTGAAATTCAAGCACTAACTGAATTGCGACACCGTCACATTGTGAGGCTATTTGGATTTTGTTCACATGTTAGGAACTCATTTTTGGTTTATGAGTTTGTGGATGGAAACAACGTTCTAAATATCTTGATGAATCACGAAAAAGTTCAAAACTTCAAATGGATTAATAGATTCAATGTTGTTAAGGGAGTGGCAAATGCATTATCTTACATGCATCATCAAATATCACCTCCATTGATTCATAGAGACATATCAAGCAAGAATATTTTGGTAGATGAGAATTTTGAAGCTCATGTAACAGACTTTGGCACTGCAAGATTCTTGAGCCACAATTCATCTTATCAGACTTCATTTGCCGGAACATTCGGATACACAGCTCCAGAACTTGCTTATACTCAGGAGGTAAACGAGAAGTGTGATGTGTACAGTTTCGGGGTGCTAACATTAGAAGTGCTGATGGGGATGCATCCAGGTGATCTAATCTTATCGATATTATCATCATCGTCATCTGCCACTTCTTCACCGATTTTGCTAAAAGATGTAATTGACCAACGTGTTTCACCGCCTGTCACGAATGATGAGATAGACAAGGTAATTCTCATTACGAAGTTGGCATTTGCTTGTGTGCAACAAAATCCTCAATCTCGGCCAACAATGCACGATGTTTCTAATCAACTGGCAGCAAAATTGAAGCCAAAGAATGCAGCAGCAGCGGTCGAGTTTTCATCCATCAAAATTGGTGAACTGCTTGCAATCGGATGA 3177 0.3705 MKLPFINFKTIITTTLLFFSISLHNVALETGDDAASEVDALLTWKGSLDKQSQHILASWQPNHPPCSSGGNWSGISCNEARRVETIDLDSYGLRGTLHDFTFSSFKHLIEISLGNNSLYGTIPSNISMLSKLGYLDLRYNNFSGSIPLGICFLTNLKILSLYENNISGTIPKEIGSSLVKLTYLDLSRNALTGVVPDSIGNLTELTVLTLSFNQLFGFIPSSIGNLINLEKLQLYGNQLNGSIPQSVGRLTSLVLLGLSTNNFSGPVPSSIGNLLKLETLYLYENQLSGSIPNTIGRLTSLVDLKLSVNNLSGPIPSSIGNLVKLQILYLNQNQLTGSIPSSFGNLVKLEQLYLDHNQLSGSIPRQLNNLIHFKYLQLSENNFSGSLPDNLCLGGKLTKFTAQRNQFTGRLPMSLKNCTSLERVRLEMNQLSGDLDLGIYPHLDYIDLSHNNFSGTLSSNWGKCKSLTSLKISNNKIGGRLPKNFGEASQIQMLDLGSNNLFGEIPISFANMTSLFNLNLEDNMLSGVIPNEIRMLSGLSSLNLASNNLSGIIPQDIGQCRNLMTLNLSFNSFGANIPSQIGNIRSLQNLDLSHNQLSGEVPQEFGQLVVLESLRLSNNNISGLLPSTLENCISLTSIDISNNEFEGPLPNIRAFQNATSDSVKNNKGLCGHIDGLTPCFSKHGQRKKSSKVVRLIAVLVGIFVVIVVLVGIFMCARKWKKKSMTIREQINPIEDLLSIWSFDGKMVYENIIEATGDFNSEYCIGQGGYGSVYRAELSTGQVVAVKRLHNSEDLLKSSKIEKSFTSEIQALTELRHRHIVRLFGFCSHVRNSFLVYEFVDGNNVLNILMNHEKVQNFKWINRFNVVKGVANALSYMHHQISPPLIHRDISSKNILVDENFEAHVTDFGTARFLSHNSSYQTSFAGTFGYTAPELAYTQEVNEKCDVYSFGVLTLEVLMGMHPGDLILSILSSSSSATSSPILLKDVIDQRVSPPVTNDEIDKVILITKLAFACVQQNPQSRPTMHDVSNQLAAKLKPKNAAAAVEFSSIKIGELLAIG 1058
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03375 1058 SMART LRR_typ_2 322 345 IPR003591 -
Tsu03g03375 1058 SMART LRR_typ_2 536 560 IPR003591 -
Tsu03g03375 1058 SMART LRR_typ_2 202 225 IPR003591 -
Tsu03g03375 1058 SMART LRR_typ_2 274 298 IPR003591 -
Tsu03g03375 1058 SMART LRR_typ_2 153 177 IPR003591 -
Tsu03g03375 1058 SMART LRR_typ_2 178 201 IPR003591 -
Tsu03g03375 1058 SMART LRR_typ_2 226 250 IPR003591 -
Tsu03g03375 1058 SMART LRR_typ_2 346 370 IPR003591 -
Tsu03g03375 1058 SMART LRR_typ_2 584 607 IPR003591 -
Tsu03g03375 1058 SMART LRR_typ_2 608 631 IPR003591 -
Tsu03g03375 1058 SUPERFAMILY L domain-like 438 671 - -
Tsu03g03375 1058 Pfam Leucine rich repeat N-terminal domain 35 78 IPR013210 -
Tsu03g03375 1058 Pfam Leucine rich repeat 154 215 IPR001611 GO:0005515
Tsu03g03375 1058 Pfam Leucine rich repeat 561 621 IPR001611 GO:0005515
Tsu03g03375 1058 Pfam Leucine rich repeat 466 525 IPR001611 GO:0005515
Tsu03g03375 1058 Pfam Leucine rich repeat 304 359 IPR001611 GO:0005515
Tsu03g03375 1058 Gene3D Phosphorylase Kinase; domain 1 720 838 - -
Tsu03g03375 1058 Pfam Protein kinase domain 762 1029 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03375 1058 ProSitePatterns Tyrosine protein kinases specific active-site signature. 884 896 IPR008266 GO:0004672|GO:0006468
Tsu03g03375 1058 ProSiteProfiles Protein kinase domain profile. 758 1035 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03375 1058 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 127 1042 - -
Tsu03g03375 1058 ProSitePatterns Protein kinases ATP-binding region signature. 764 786 IPR017441 GO:0005524
Tsu03g03375 1058 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 12 131 - -
Tsu03g03375 1058 Gene3D Transferase(Phosphotransferase) domain 1 842 1049 - -
Tsu03g03375 1058 PRINTS Leucine-rich repeat signature 584 597 - -
Tsu03g03375 1058 PRINTS Leucine-rich repeat signature 181 194 - -
Tsu03g03375 1058 Gene3D Ribonuclease Inhibitor 33 177 IPR032675 -
Tsu03g03375 1058 Gene3D Ribonuclease Inhibitor 538 677 IPR032675 -
Tsu03g03375 1058 Gene3D Ribonuclease Inhibitor 439 537 IPR032675 -
Tsu03g03375 1058 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 127 1042 - -
Tsu03g03375 1058 Gene3D Ribonuclease Inhibitor 178 255 IPR032675 -
Tsu03g03375 1058 SUPERFAMILY RNI-like 86 434 - -
Tsu03g03375 1058 SMART LRR_sd22_2 346 372 - -
Tsu03g03375 1058 SMART LRR_sd22_2 153 176 - -
Tsu03g03375 1058 SMART LRR_sd22_2 322 343 - -
Tsu03g03375 1058 SMART LRR_sd22_2 178 204 - -
Tsu03g03375 1058 SMART LRR_sd22_2 274 289 - -
Tsu03g03375 1058 SMART LRR_sd22_2 105 128 - -
Tsu03g03375 1058 PANTHER MDIS1-INTERACTING RECEPTOR LIKE KINASE 2-LIKE 12 131 - -
Tsu03g03375 1058 SUPERFAMILY Protein kinase-like (PK-like) 740 1031 IPR011009 -
Tsu03g03375 1058 Gene3D Ribonuclease Inhibitor 256 438 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03375 Tsu-Chr3 46544341 46548683 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03375 34 932 Receptor kinase-like Gene Family AT4G08850 43.531 0.0 718
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu03g03375 Pkinase 2.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03375 - - vvi:100262220 947.577