Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03357 ATGGAGGAAGGTGAAATAGGAGATAGTGGTTCAAAAAATGTTGTTCCATCCGAGTTTGTTGCAGCTGTTTCACCGACGGCTGCGGCTGCTACAACGGCGTGGTCGGATGCACCAGCGAAAAAGATAGTGAGGCAGCTTGATTTCAATGCTATGACGGAACAGTCGAAACCACAGCAGCCGCTATTGCAACAGACGACTGTAATGACGCAGAAACCGGTGGGTGGTTCTCCTTTGCCGCCTCCGCAGCCGATGATAGGACTCCAACACTCTTCTGTGAGGGTTGgGAAACCGGAATCTcccaaaccaaaaccaagaCCTAACTTTGATGTGAAAGACGGTACTCCAAAGAAGCAAAAGCAATGCAATTGTAAACACTCTAGATGCTTAAAACTATATTGTGAATGTTTTGCATCGGGAATATATTGTGATGGTTGCAACTGTGTAAACTGTTTCAACAATGTTGATAACGAAGCTGCTAGACGAGAGGCTGTTGAAGCTACTTTAGAGCGCAATCCAAATGCATTTAGGCCCAAAATTGCGAGCAGCCCTCAGGGAGCACGAGATAGCAGGGAGGAGACTGGGGAAGGTTTAGTATTAATAAAACATAACAAGGGGTGCCATTGTAAAAAATCTGGCTGTCTTAAGAAGTACTGTGAATGCTTCCAAGCCAACGTTCTTTGTTCTGAGAATTGTAGATGCATGGACTGCAAGAATTTTGAGGGAAGTGAAGAGAGACAGGCTTTGTTTCATGGAGATCAAATTAACAATACATATATTCAGCAAGCGGCAAATGCTGCCATAACTGGAGCTATTGGTTCCTACGGCTATTCATCGCCTCCGgtatcaaagaaaagaaaaggtcaGGAACTCTTCTTGTGGCCTACATCCAAGGATCCATCAATTAGCAAGCCGGGACAACAGATAAACCATGTCAAAGGTCCAGCAGCAGCATCCTCATCATTGTCACCTGTCCCACCAAATGCTCGAGTTGCAAATGCAACATTAGGTCAAAGTCCACAAAAATTAAAGTACAGGTCTCTTTTAGCAGACATTGTACAACCACACCACCTCAAAGAGCTTTGTTCAGTTCTGGTGCTAGTATCTGGACAAGCTGCAAAGACACTTGCAGACCAGAAAAGTTCAGCGGAAAAACGTACAGAAGATCAGACAGAAACTTCCCTTGCTTCTTCAACTCAAGAGCAATTACCTAGTCAAAAAGACGTTGATGTTGAAAAGGCGGCTATGGATGATGATTGTTCGAGTGCAAATCAAACAGATAAGATCAGCCCAAGTAATTCCTGTTCAGATGGTGCCGATGTCCCGAAAGCGAGACCAATGTCTCCTGGGACTTTAGCTTTGATGTGTGATGAACAAGATACAATGTTCATGAGAGCTTCCTCTCCCGTTGGGCCTATGAACCATGCTTGCAACACATCTTCGCAACAAGGAGTGACAGAGGTCTATGCTGAACAAGAAAGGATTGTATTAACACAGTTTAGAGATTTTCTCAATAGAGTTATCACTATGGGAGAAATAAATGAGACAAAGTGTTCTTCATTGGCTAGAAGTGAATTAGAGAATCAAAAGAACCCAATCAACAATGAAACTGGAAATTCAAGTACCGACATAGTACATCAGCAGGAAGCTACTAGCAATGGTGATCCCAAAACTGTAGTTCCACCTATGGCCACAACTTCAACACCTATGGCCACAACTTCAACAACTGTGGTCCTTGGTGATGCTGTAGCTGAAAATGGAGAAACTAAGCTGAAGATGGAAAATAAACTATGA 1791 0.426 MEEGEIGDSGSKNVVPSEFVAAVSPTAAAATTAWSDAPAKKIVRQLDFNAMTEQSKPQQPLLQQTTVMTQKPVGGSPLPPPQPMIGLQHSSVRVGKPESPKPKPRPNFDVKDGTPKKQKQCNCKHSRCLKLYCECFASGIYCDGCNCVNCFNNVDNEAARREAVEATLERNPNAFRPKIASSPQGARDSREETGEGLVLIKHNKGCHCKKSGCLKKYCECFQANVLCSENCRCMDCKNFEGSEERQALFHGDQINNTYIQQAANAAITGAIGSYGYSSPPVSKKRKGQELFLWPTSKDPSISKPGQQINHVKGPAAASSSLSPVPPNARVANATLGQSPQKLKYRSLLADIVQPHHLKELCSVLVLVSGQAAKTLADQKSSAEKRTEDQTETSLASSTQEQLPSQKDVDVEKAAMDDDCSSANQTDKISPSNSCSDGADVPKARPMSPGTLALMCDEQDTMFMRASSPVGPMNHACNTSSQQGVTEVYAEQERIVLTQFRDFLNRVITMGEINETKCSSLARSELENQKNPINNETGNSSTDIVHQQEATSNGDPKTVVPPMATTSTPMATTSTTVVLGDAVAENGETKLKMENKL 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03357 596 PANTHER TESMIN/TSO1-RELATED 37 575 IPR028307 -
Tsu03g03357 596 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 118 153 IPR005172 -
Tsu03g03357 596 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 204 238 IPR005172 -
Tsu03g03357 596 MobiDBLite consensus disorder prediction 299 331 - -
Tsu03g03357 596 ProSiteProfiles CRC domain profile. 117 241 IPR005172 -
Tsu03g03357 596 MobiDBLite consensus disorder prediction 528 559 - -
Tsu03g03357 596 MobiDBLite consensus disorder prediction 70 120 - -
Tsu03g03357 596 MobiDBLite consensus disorder prediction 418 436 - -
Tsu03g03357 596 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 5 ISOFORM X1 37 575 - -
Tsu03g03357 596 MobiDBLite consensus disorder prediction 96 119 - -
Tsu03g03357 596 MobiDBLite consensus disorder prediction 375 445 - -
Tsu03g03357 596 SMART CXC_2 201 242 IPR033467 -
Tsu03g03357 596 SMART CXC_2 116 156 IPR033467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03357 Tsu-Chr3 46310335 46317115 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03357 38 569 CPP Transcription Factor Family AT4G29000 53.590 0.0 542
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Tsu03g03357 TCR 2.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03357 - - gmx:100777698 799.275