Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03352 ATGTCAACTGCTCCGGCGCCGTCATCGCCGCCGGCGGGTAACGCCACCGCGCCTCCGCCGTCAACCCCTTCCGCACCACCACCTGCAACACCTTCCTCACCACCACCTGCAACACCTTCATCACCACCTCCGGCAGTTCCGTCGTCACCTCCTCCGGCGACTCCCTCCGCTCCTCCTCCGGCGACTCCTTCAAAACCATCTCCGACGACTCCGTCAGCACCTCCACCAGCTACACCTTCAATTTCACCACCAGCACCAACAACTCCGTCGACCACTCCACCGTCGAGTTCTCCGCCGTCACCACCGTCGACAACTCCCGGAAGTGGCACTACTCCAAGTCCACCATCACCACCTTCCACTAAAACTCCACCAAGCTCTGATCGAAGCCCAACACCACCTTCATCCAAATCTCCACCATCTCCACCGTCTTCTTCATCAAGTATTTCTACCGGAGTAGTCGTCGGAATCGCCGTCGGAGCTGTGGCAATTCTTGTTGTGTTGAGCATTCTGTGCATTTGCTGtaggaagaaaaagagaagacgTGATGAAGAATACTATGGTCAACAGCATCACCAACCACCACCTCAGGGATCCAAAGTTGATCCTTATGGTGGTCCACCACAACAATGGCAACATAATGCTCACCCTCCATCAGATCATGTAATTTCAACAATACCTAAGCCGCCACCTCCTGCTCCAATTCCATCGCGACCGCCGTCTTATGTTGCACCACCACCGCCTCCTTTCATAAACAGCAGTGGTGGTTCTGGATCAAACTATTCAGGCGGCGAACTACTTCCACCTCCTTCTCCAGGCCTTGCATTTAGTTCCGCAAAGAGCACTTTTACTTACGAGGAGTTGGCACGTGCAACTGATGGCTTCTCTGATGCTAATCTCCTCGGACAAGGTGGATTTGGATATGTTCATAGAGGTATACTCCCTAATGGTAAAGAGGTTGCTGTTAAGCAGCTAAAAGCAGGAAGTGGACAAGGAGAACGCGAGTTTCAAGCTGAAGTAGAGATTATTAGCCGTGTACATCACAAGCATCTTGTTTCACTTGTTGGATACTGCAGCACTGGTTTTCAGAGGCTACTTGTTTATGAATTTGTTCCCAACAATACATTGGAATTCCATTTACATGGAAAAGGACGACCAACAATGGATTGGCCAACAAGATTGAGAATTGCTTTAGGATCTGCGAAAGGACTGGCTTATCTTCATGAAGATTGTCATCCTAAGATCATTCACCGTGATATTAAAGCTGCTAacattcttttggattttaagTTTGAAGCGAAGGTTGCTGATTTTGGCCTTGCAAAGATTGCTTCTGATCTAAATACTCATGTTTCTACTCGTGTGATGGGGACTTTTGGGTATCTTGCTCCAGAATACGCAGCTAGTGGAAAACTCACAGACAAATCAGATGTTTTCTCGTATGGAGTCATGCTCCTCGAGTTATTAACTGGACGACGTCCGGTTGATAAAAACCAGACTTTCATGGAGGATAGTTTGGTAGAATGGGTAAGTGTTACCGTCCTCCAACATTTCTCGAAAGCTAAATATAATCTGCAACTATAA 1581 0.4744 MSTAPAPSSPPAGNATAPPPSTPSAPPPATPSSPPPATPSSPPPAVPSSPPPATPSAPPPATPSKPSPTTPSAPPPATPSISPPAPTTPSTTPPSSSPPSPPSTTPGSGTTPSPPSPPSTKTPPSSDRSPTPPSSKSPPSPPSSSSSISTGVVVGIAVGAVAILVVLSILCICCRKKKRRRDEEYYGQQHHQPPPQGSKVDPYGGPPQQWQHNAHPPSDHVISTIPKPPPPAPIPSRPPSYVAPPPPPFINSSGGSGSNYSGGELLPPPSPGLAFSSAKSTFTYEELARATDGFSDANLLGQGGFGYVHRGILPNGKEVAVKQLKAGSGQGEREFQAEVEIISRVHHKHLVSLVGYCSTGFQRLLVYEFVPNNTLEFHLHGKGRPTMDWPTRLRIALGSAKGLAYLHEDCHPKIIHRDIKAANILLDFKFEAKVADFGLAKIASDLNTHVSTRVMGTFGYLAPEYAASGKLTDKSDVFSYGVMLLELLTGRRPVDKNQTFMEDSLVEWVSVTVLQHFSKAKYNLQL 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03352 526 SMART serkin_6 294 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03352 526 CDD STKc_IRAK 300 509 - -
Tsu03g03352 526 ProSitePatterns Protein kinases ATP-binding region signature. 300 322 IPR017441 GO:0005524
Tsu03g03352 526 ProSiteProfiles Protein kinase domain profile. 294 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03352 526 MobiDBLite consensus disorder prediction 184 267 - -
Tsu03g03352 526 Gene3D Phosphorylase Kinase; domain 1 270 369 - -
Tsu03g03352 526 MobiDBLite consensus disorder prediction 222 251 - -
Tsu03g03352 526 MobiDBLite consensus disorder prediction 11 140 - -
Tsu03g03352 526 PRINTS Proline rich extensin signature 28 44 - -
Tsu03g03352 526 PRINTS Proline rich extensin signature 59 84 - -
Tsu03g03352 526 PRINTS Proline rich extensin signature 7 28 - -
Tsu03g03352 526 PANTHER SERINE-THREONINE/TYROSINE-PROTEIN KINASE CATALYTIC DOMAIN-CONTAINING PROTEIN-RELATED 42 510 - -
Tsu03g03352 526 MobiDBLite consensus disorder prediction 1 149 - -
Tsu03g03352 526 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 42 510 - -
Tsu03g03352 526 Pfam Protein tyrosine and serine/threonine kinase 299 497 IPR001245 GO:0004672|GO:0006468
Tsu03g03352 526 SUPERFAMILY Protein kinase-like (PK-like) 273 500 IPR011009 -
Tsu03g03352 526 Gene3D Transferase(Phosphotransferase) domain 1 370 523 - -
Tsu03g03352 526 ProSitePatterns Serine/Threonine protein kinases active-site signature. 414 426 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03352 Tsu-Chr3 46273030 46276794 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03352 114 508 Trihelix Transcription Factor Family AT1G70460 52.141 5.71e-130 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Tsu03g03352 PK_Tyr_Ser-Thr 7.8e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03352 - - gmx:100781944 536.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03352 03 46273030 46276794 Tsu03g03352 03 46273030 46276794 ECH