LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g03332	ATGACAGAACCTGCATCTACTGCGGCATCTTGCAGTGAAAACTCGTCGCAGCCTCTTGAAATAGTAATTGGAATTGACATTGGCACATCACCATGCCATGTTTCTGTGTGGGACGGTTCTGCAGTGGCGATTTGGAAAAACGAAATACTTGAGATGATGAAGAGATTCTGCGAAGCTTCCAAAGATCATGACTTTTCTATTGGAGCTGGTAATAGTACTGAAGTCTCACCCGAGAATATGGATGCAATTTTCGAcatgaaaatgttttttaacataattttcAGTGAAAGTGCAAAGTTTCCATTTCTGATGCACACCGTGGACATTAAGGATCGGCCTTTTGTTGATGCATTTATGAAAAAACTGTGGAAAACTACTATCTCCATAGAACTACTTGGAAATTTTCTGATTGAGTTAACATCAATGATTGAAACTGAGATGAACGGACGTATAAGAAATGTAGTGTTTACAGTTCCAGTTTCATTTAGTCATTTGCAGCTAAACCAGATACATCGTGCTTGTGAGATGGCCGATCTTAAAGTTATCATTACGCCGCAACCAACAGCAGTGGCTTTGTGGTATGTGATTCATAAACTGTATGCTTATGATTCTTCTGATGAGGATAATATGGACaatgaaattaagaaaattgcTCTCATTTTCAATATGGATGCCGGTTATTGTGATGTTTCTGTTATTGAAGCGGAAAACGGAAAATTCCAAATAAAAGCCATGGCAGGAAGTACTATTGGTGGAGAAGATTTGCTTCGAAATATGATGTGTCATCTCTTACCTGATTCTGAAAGGATATTCAAGAGACAATTTCACTGGAACTCAGATATTATATCGACGGCTATTCTTCGAAGTAGAATCAACGACATGATTACTAAGCTTTCGTCTGAGACAAGTGTTGAGATTGACTTAAATCCAAATCCGGTAGAAGGTTTGAAGATACAGAGGGTTGTAACGCGGAAGGAGTTTGAGGATGTAAACAAAGATGTGTTTGACAAGTGTGAAAAGCTAATCATCGATTGCTTGAAAGATGCGAAGATAGAAGCCGAGAATATAAATGATGTGATAATTGTAGGCGGATGTTGCAATATACCGGGGGTCGAGAATCTTGTTACTAAAAAATGCAACGGAAAGGAAATTTATAAAGGTATGAATAATTGTTTGAATGCTGTACTTTGTGGTGCAGTAGTGGCAGGAGCTATTGTTGACGAGGCCTCCGATAACGCGGACTTGTTTACTTCTCAAGTCACACTTCATGATATCGGAATTCTAGCTGAAGGAAAGAAATTTGAACCTGTTATTCCAAAGAACACATCAGTGCCAACGGCGTGGAAtatagtttcttcaactgttGATGATAATCAAACTACAGCATCGATTGTTATCTACGAAGGCGGTGAGGAGGGACAAATGGCTGATGAAAACAATGTTTTGGGAAATTTGGAAATAACTGAAATACCTGAAGCACCAAAAGGGGTTCCTAAAATCACTGTTTCGATGACCATTGACCATAGAAACAGGTTGACAGTTACTACTTCTATTGAGATGCCAACATCTGATTCTGATCAACAATCTGTAATTACACAGTATGATGATCAGTTCCTAATTAGAACAAAGTTTGATGATACAATAGATTTGGTTAATATCTTCGATGTGGAACAATAA	1677	0.3721	MTEPASTAASCSENSSQPLEIVIGIDIGTSPCHVSVWDGSAVAIWKNEILEMMKRFCEASKDHDFSIGAGNSTEVSPENMDAIFDMKMFFNIIFSESAKFPFLMHTVDIKDRPFVDAFMKKLWKTTISIELLGNFLIELTSMIETEMNGRIRNVVFTVPVSFSHLQLNQIHRACEMADLKVIITPQPTAVALWYVIHKLYAYDSSDEDNMDNEIKKIALIFNMDAGYCDVSVIEAENGKFQIKAMAGSTIGGEDLLRNMMCHLLPDSERIFKRQFHWNSDIISTAILRSRINDMITKLSSETSVEIDLNPNPVEGLKIQRVVTRKEFEDVNKDVFDKCEKLIIDCLKDAKIEAENINDVIIVGGCCNIPGVENLVTKKCNGKEIYKGMNNCLNAVLCGAVVAGAIVDEASDNADLFTSQVTLHDIGILAEGKKFEPVIPKNTSVPTAWNIVSSTVDDNQTTASIVIYEGGEEGQMADENNVLGNLEITEIPEAPKGVPKITVSMTIDHRNRLTVTTSIEMPTSDSDQQSVITQYDDQFLIRTKFDDTIDLVNIFDVEQ	558

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g03332	558	Gene3D	-	211	385	-	-
	Tsu03g03332	558	Gene3D	-	23	403	-	-
	Tsu03g03332	558	Gene3D	Substrate Binding Domain Of DNAk; Chain A, domain 1	404	534	IPR029047	-
	Tsu03g03332	558	PANTHER	HEAT SHOCK PROTEIN 70KDA	11	530	IPR013126	GO:0005524\|GO:0140662
	Tsu03g03332	558	PRINTS	70kDa heat shock protein signature	389	409	-	-
	Tsu03g03332	558	PRINTS	70kDa heat shock protein signature	21	34	-	-
	Tsu03g03332	558	PRINTS	70kDa heat shock protein signature	356	372	-	-
	Tsu03g03332	558	PRINTS	70kDa heat shock protein signature	226	236	-	-
	Tsu03g03332	558	PRINTS	70kDa heat shock protein signature	497	513	-	-
	Tsu03g03332	558	Pfam	Hsp70 protein	22	519	IPR013126	GO:0005524\|GO:0140662
	Tsu03g03332	558	Gene3D	Actin; Chain A, domain 4	252	337	-	-
	Tsu03g03332	558	PANTHER	HEAT SHOCK 70 KDA PROTEIN 8	11	530	-	-
	Tsu03g03332	558	SUPERFAMILY	Heat shock protein 70kD (HSP70), peptide-binding domain	418	518	IPR029047	-
	Tsu03g03332	558	Gene3D	-	84	134	-	-
	Tsu03g03332	558	CDD	HSP70_NBD	23	404	-	-
	Tsu03g03332	558	SUPERFAMILY	Actin-like ATPase domain	21	197	IPR043129	-
	Tsu03g03332	558	SUPERFAMILY	Actin-like ATPase domain	216	405	IPR043129	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g03332	Tsu-Chr3	46058160	46059836	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g03332	22	515	Calmodulin-binding Proteins	AT3G09440	32.609	1.50e-61	213

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g03332	K09489		-	gmx:100809773	444.891