Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03319 ATGGGGATGGAGCAAAACAACGTGATCGCACCGTTCATTATGAAGACATATCACATGGTTAATGAACCAAACACAGATAACCTTATCAAGTGGGGTCCATCAAACAACAGTTTCATCGTCCTTGATCCACTTCAATTCTCTCACTCACTTCTACCTGTTTTCTTCAAACACAACAATTTCTCTAGCTTTGTTCGTCAACTCAACACCTACGGTTTTAGAAAAGTTGATCCGGATAGATGGGAATTTGCTAATGAGTATTTTCTAAGAGGACAAAAGCACTTATTGAAGAACATAGTTAGGAAGAAGCACGTTGGTGGAGTTGGAAATGGAAggaataataattattttaatgagGTGAAATTTGAAGAtttagaagaagatgaagttatgATGAAGGAAATATTGAAGCtaaaagaagaacaaagaatTTTAGATGAAGAGCTTCAAGGAATGAACAAAAGATTAGAAACAACAGAAAAAAGACCACAACAAATGATGGCTTTTCTTTGCAATGTCGTTGAAGATCCTCAAATTCTATCAAGAATACttaatgagagagaaaaacaaataattgttgagaagaaaaaaagacgGTTTATATCTCCGCCGGAGACGGCGGCGATGACGGCGGCGACGACGTCGACTTCTTCGTCATCCTCCGGCATGGGAATAGCGAATTCGGTGAAGATGGAGTTTGATGAAGATGAGGTAACCATTACGAATAATATGATGTCGTCATCGCCGGAGATGGGTTTCGAAATTGATTATCACCACCGTGTGCCGCCGCGGGAGTTGACACCGGCGGGGGATTGGTGGGGGCAGAATCAGATTGGACAAATGGGTTTTGGGAACGATTGTGGAGTTGGTCCGACGCCGTTGACGGTGGTGTCTCCGGCGCCGGTGATGGGTGGTGGGAATAGTGATAGTAGAACGGAGCGTGTGGGAATTTTCAATGAAATTGCGGCGGAGAATAGTAAGTTGCCACCTTATCCTTTTTCATTGTTAGAAGGTGGCTTTTAG 1020 0.3941 MGMEQNNVIAPFIMKTYHMVNEPNTDNLIKWGPSNNSFIVLDPLQFSHSLLPVFFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEYFLRGQKHLLKNIVRKKHVGGVGNGRNNNYFNEVKFEDLEEDEVMMKEILKLKEEQRILDEELQGMNKRLETTEKRPQQMMAFLCNVVEDPQILSRILNEREKQIIVEKKKRRFISPPETAAMTAATTSTSSSSSGMGIANSVKMEFDEDEVTITNNMMSSSPEMGFEIDYHHRVPPRELTPAGDWWGQNQIGQMGFGNDCGVGPTPLTVVSPAPVMGGGNSDSRTERVGIFNEIAAENSKLPPYPFSLLEGGF 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03319 339 PRINTS Heat shock factor (HSF) domain signature 12 35 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu03g03319 339 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu03g03319 339 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu03g03319 339 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 10 332 IPR027725 -
Tsu03g03319 339 SUPERFAMILY "Winged helix" DNA-binding domain 9 101 IPR036390 -
Tsu03g03319 339 PANTHER HEAT STRESS TRANSCRIPTION FACTOR C-1 10 332 - -
Tsu03g03319 339 Coils Coil 134 161 - -
Tsu03g03319 339 MobiDBLite consensus disorder prediction 206 222 - -
Tsu03g03319 339 MobiDBLite consensus disorder prediction 203 222 - -
Tsu03g03319 339 SMART hsfneu3 8 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu03g03319 339 Pfam HSF-type DNA-binding 12 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Tsu03g03319 339 Gene3D - 4 102 IPR036388 -
Tsu03g03319 339 ProSitePatterns HSF-type DNA-binding domain signature. 51 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03319 Tsu-Chr3 45921999 45923863 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03319 8 198 HSF AT3G24520 63.077 4.10e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Tsu03g03319 HSF_DNA-bind 1.2e-30 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03319 K09419 - gmx:100794896 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03319 03 45921999 45923863 Tsu03g03319 03 45921999 45923863 ECH