Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03279 ATGGAAGACGATAACAGATACCCATCAAAAGGATACCCATTGAGACGCAAAAACCCTAATCTTCGTCAAAAACACCCAATTCGCAATTTACAATTTCATCGCTACAACGATCCGGAAGACAACAACATCGATGAAGAACCCGAAGAATTCGACGATTATAACATAGATGATGGCGGAATTGAAAATGGGTATATCGGTAATTTCGAAAAACACGAAGGATTCATCggtaaaaagagaaaattgcgTAGCGGTGGTGGTGGTAGTAGTGGTGGTAGTGGTTCTGTTTCAAATTATGAATTAGTTCCACGTGGCAAATTCACATACGTTAATCGCGGCGGTGGTGTCGgtgttggtggtggttgttCTTCTGGGTCAGAGGAATGGACAGAACATGCAACATTTGTGTTATTAGAGATTTGGGGTGAAAAGTTTCTTCAACTTGGAAGAAACAGTTTGAGATCAGAGGAATGGCATGAAGTATCTGAGAAAGTTTCTgaagaattgaaaattgaaaagagtGTTGAACAATGTAAAAGTGTATTGGATAAAGTGAAAAGAAGGTATAAGAAAGAGAAGAGTAGAATGGATGAAATGGGTTTAGGTGTAAATTCTTGTAAGTGGCCATTTTTCAAGAGAATGGATATGTTGATGTCTTCGAGTGCGAGACAAGAGTATGGACTTGCTTGCGGTGTTGATTCGGGGGAATATGTGTTTATGAATACACGAGTTTATTTGAATAGGTCGAATGGTTTTGATGAGATGAGGGATAGTCCGGGTGAGTCTGAGGCATCTGAGGATGATAAGGGAGATGAGGaggatggtgatgatgatgatgattttgatgaggTTGATAAGGAAGAGGAGGAGGCTTCTTATAGGGTTTTGGCTGATTCTATTCACAAGTTTGGGAAGATATATGAGAAGATTGAGAATACTAAGAGGCAACAGATGATGGAACTGGAGAAGATGAGGTTGGATTTTAATAAGGATTTGGAGTTGCAGAAGAAACAGATTTTGGAAAAGGCTCAGGCTGAAATATCGAAAATACAGGAACCGGGAGATGATGGTCATGATGAAGAGGTGGAGGATGATGAAGACACAGACATTTCTGCAGATAATCTCAGTGAATAA 1131 0.3678 MEDDNRYPSKGYPLRRKNPNLRQKHPIRNLQFHRYNDPEDNNIDEEPEEFDDYNIDDGGIENGYIGNFEKHEGFIGKKRKLRSGGGGSSGGSGSVSNYELVPRGKFTYVNRGGGVGVGGGCSSGSEEWTEHATFVLLEIWGEKFLQLGRNSLRSEEWHEVSEKVSEELKIEKSVEQCKSVLDKVKRRYKKEKSRMDEMGLGVNSCKWPFFKRMDMLMSSSARQEYGLACGVDSGEYVFMNTRVYLNRSNGFDEMRDSPGESEASEDDKGDEEDGDDDDDFDEVDKEEEEASYRVLADSIHKFGKIYEKIENTKRQQMMELEKMRLDFNKDLELQKKQILEKAQAEISKIQEPGDDGHDEEVEDDEDTDISADNLSE 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03279 376 MobiDBLite consensus disorder prediction 356 376 - -
Tsu03g03279 376 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 39 366 IPR044823 -
Tsu03g03279 376 MobiDBLite consensus disorder prediction 1 25 - -
Tsu03g03279 376 Coils Coil 174 194 - -
Tsu03g03279 376 MobiDBLite consensus disorder prediction 33 52 - -
Tsu03g03279 376 Coils Coil 306 326 - -
Tsu03g03279 376 MobiDBLite consensus disorder prediction 250 290 - -
Tsu03g03279 376 MobiDBLite consensus disorder prediction 343 376 - -
Tsu03g03279 376 Pfam Myb/SANT-like DNA-binding domain 126 215 IPR044822 -
Tsu03g03279 376 PANTHER ALCOHOL DEHYDROGENASE TRANSCRIPTION FACTOR MYB/SANT-LIKE FAMILY PROTEIN 39 366 - -
Tsu03g03279 376 MobiDBLite consensus disorder prediction 263 286 - -
Tsu03g03279 376 Coils Coil 328 348 - -
Tsu03g03279 376 Gene3D - 128 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03279 Tsu-Chr3 45381122 45384246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03279 256 351 Trihelix Transcription Factor Family AT3G14180 38.095 7.87e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Tsu03g03279 Myb_DNA-bind_4 2.1e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03279 - - ccaj:109813475 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03279 03 45381122 45384246 Tsu03g03279 03 45381122 45384246 ECH