Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03272 ATGTACATCAAACATCGACAACTTCTTTACTATAGAGATGAATTTGGTGAAAGAGGTGAAAATGTTACGGTGGATCCAACTTTAGTTTTCTCAAACAACCGCATCAAAAACGCTTACGTGGCGTTACAAGCTTGGAAACAAGCTATTCTTTCTGATCCAAATAACTGCACTCTTAATTGGGTAGGTTCCAATGTATGCAAATACACAAATGTTTTCTGTGCACCCGCATTAGATAACCCTAAAATCATAACCGTCGCCGGAATCGATCTAAATCACTGTGATATCGCCGGTTATTTGCCGGAAGAGCTTGGTCTTTTAACCGATCTTGCTCTTTTTCATGTTAACACTAATCGATTCTGTGGAACGGTTCCTCATAAGTTTGAGAAGCTGAAAATCTTGTTCGAGTTAGATCTGAGTAATAACCGTTTCGCCGGAAAGTTTCCGGAAGTTGTTCTCCGGTTACCAGAATTGAAGTTTCTAGATCTGAGGTTTAATGAATTTGAAGGAACTGTACCGAAGGAGCTTTTCGATAAAGATTTGGATGCCATTTTCATTAATCATAATCGATTTGTTTTCGATTTACCTGATAATTTCGGTAATTCACCGGTTTCGGTTATTGTTCTGGCGAATAACCGTTTTCACGGTTGTTTTCCGGCGGGGATTGGTAACATGACGAATCTGAATGAGATAATTGCAATGAATAATGGTTTTCAGTCGTGTTTACCGGAGGAGATTGGGTTGTTGAAGAATTTGACGGTGTTTGATGTTAGTTTTAATAAGTTGTTGGGACCGTTACCAGCGACGGTTGGAAATGCGGTGAGTTTGGAGGTTTTGAATGTGGCGCATAATTTTCTTTCCGGTAAGATACCGGAGACTATTTGTGCGCTACCAAATTTGCAAAACTTTACttactcttataatttctttACTGGTGAACCGCCGAGATGTTTGGCTTTACCGGCGGTGGATGATAAGAAGAATTGTTTGCCGGCAAGAAGTAATCAACGGTCGGCGAAGGAATGTAAGTCGTTTTTGTCTCACCGTGTTGATTGTAGCTCTTTTAGGTGTAAAGCTTTTGTACCTTCTTTGCCTTCACCACCACCTTCACCGGTGTTTCCTCCTCCTGTTGTTACTCCAATTTCTCCTCCACCGCCGGTGGTGGTGTCTCCACCACCTTCGCCAGTATtttctccaccaccaccaccaccaccagtgTTTTCTCCACCACCTCCAGTGTACTCTCCACCGCCGCCACCACcttctccaccaccaccacctccaccgGTTTATTCACCACCGCCGCCACCTccttcaccaccaccaccttcaCCGCCCCCACCAGTGTATTCACCACCTCCGCCTCCACCATCACCCCCACCACCTTCtccaccaccacctcctccCCCGCTATATTCACCACCGCCACCTCCACCAGTAtattcaccaccaccacctccaccgGTATATTCtccaccaccacctcctccCTCACCGCCACCACCATCTCCCCCTCCTCCAGTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATTTACCACCACCTCCTCCACCGCCTCCACCACCACCTTCACCTATTCCTCCACCACCATATTGTGTTAGGTCTCCACCACCTCCACCACCAAATTCACCACCTCCACCGGCAAATTCACCACCTCCACCGGCTCCTGTATTCTCCCCACCACCACCTGTACCTTACTACTATAACTCACCACCTCCACCAGCTCATTCGCCTCCCCCACCACATCATTCACCTCCACCGCCACCTCATTCTCCTCCTCCAACTGTTTATCCCTATTTATCTCCCCCACCACCTCCTCCAGTTCACTCACCTCCACCACCAGTCCATTCCCCACCACCACCATCTCCACCACCTTGTATAGAACCACCACCACCCCCATCACCACCACCTTGTGAAGAACACTCACCTCCACCACCATATCAATCACCTTATCATCCACCACCATCCCCATCACCACCACCAGTTTATTACAATTCACCGCCACCACCTCCGGTATATTCTTCGCCTCCACCAGTTCATTACAATTCACCCCCACCACCACCGGTGTATTCTTCGCCTCCTCCACCGGTTCAATATTACAATTCACCACCGCCACCACCGGTTTATtcttcaccaccaccaccaccagtcTCACCACCACCCGCACCTGTATATGAAGGGCCATTACCACCAGTTGTTGGAATATCATAtgcatcaccaccaccaccacccttTTATTGA 2289 0.4176 MYIKHRQLLYYRDEFGERGENVTVDPTLVFSNNRIKNAYVALQAWKQAILSDPNNCTLNWVGSNVCKYTNVFCAPALDNPKIITVAGIDLNHCDIAGYLPEELGLLTDLALFHVNTNRFCGTVPHKFEKLKILFELDLSNNRFAGKFPEVVLRLPELKFLDLRFNEFEGTVPKELFDKDLDAIFINHNRFVFDLPDNFGNSPVSVIVLANNRFHGCFPAGIGNMTNLNEIIAMNNGFQSCLPEEIGLLKNLTVFDVSFNKLLGPLPATVGNAVSLEVLNVAHNFLSGKIPETICALPNLQNFTYSYNFFTGEPPRCLALPAVDDKKNCLPARSNQRSAKECKSFLSHRVDCSSFRCKAFVPSLPSPPPSPVFPPPVVTPISPPPPVVVSPPPSPVFSPPPPPPPVFSPPPPVYSPPPPPPSPPPPPPPVYSPPPPPPSPPPPSPPPPVYSPPPPPPSPPPPSPPPPPPPLYSPPPPPPVYSPPPPPPVYSPPPPPPSPPPPSPPPPVXXXXXXXXXXXXXXXXXXXXLPPPPPPPPPPPSPIPPPPYCVRSPPPPPPNSPPPPANSPPPPAPVFSPPPPVPYYYNSPPPPAHSPPPPHHSPPPPPHSPPPTVYPYLSPPPPPPVHSPPPPVHSPPPPSPPPCIEPPPPPSPPPCEEHSPPPPYQSPYHPPPSPSPPPVYYNSPPPPPVYSSPPPVHYNSPPPPPVYSSPPPPVQYYNSPPPPPVYSSPPPPPVSPPPAPVYEGPLPPVVGISYASPPPPPFY 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03272 762 Gene3D Ribonuclease Inhibitor 39 203 IPR032675 -
Tsu03g03272 762 Pfam Leucine Rich Repeat 274 296 IPR001611 GO:0005515
Tsu03g03272 762 Gene3D Ribonuclease Inhibitor 204 344 IPR032675 -
Tsu03g03272 762 Coils Coil 507 507 - -
Tsu03g03272 762 PRINTS Proline rich extensin signature 363 384 - -
Tsu03g03272 762 PRINTS Proline rich extensin signature 387 403 - -
Tsu03g03272 762 PRINTS Proline rich extensin signature 407 424 - -
Tsu03g03272 762 MobiDBLite consensus disorder prediction 407 508 - -
Tsu03g03272 762 MobiDBLite consensus disorder prediction 382 401 - -
Tsu03g03272 762 MobiDBLite consensus disorder prediction 526 762 - -
Tsu03g03272 762 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 2 448 - -
Tsu03g03272 762 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 4 2 448 - -
Tsu03g03272 762 MobiDBLite consensus disorder prediction 407 762 - -
Tsu03g03272 762 SUPERFAMILY L domain-like 39 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03272 Tsu-Chr3 45231158 45233446 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03272 2 480 Leucine-rich Repeat extension Gene Families AT3G24480 66.944 0.0 582
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03272 - - mtr:MTR_6g086115 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03272 03 45231158 45233446 Tsu03g03272 03 45231158 45233446 ECH