Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03270 ATGGCAAGTCGATTTAAAGAAGATGAGAAAAACGAGCGCCTGATTCGAGGTCTTCTTAGACTCGAACCGAATCGGAGATGCATTAACTGTAATAGTTTGGGGCCACAATATGTGTGCACAAATTACTGGACGTTTGTTTGCACTAATTGTAGTGGAATACACCGTGAATTTACACATCGTGTGAAATCAGTTTCAATGGCTAAATTTACTTCGCAAGAAGTTACTGCACTTCAAGAAGGAGGAAATCAGCGTGCAAGAGAGATTTATTTTAAGGAATGGGATGCACGTAATTCTTTCCCTGACAGCAGTAATGTTAACAGGCTCCGAGACTTTATTAAGCATGTTTATGTGGATAGGAGATTCACCGGAGATAGTACGTCTGACAAACCACCAAGAGGTGACAAAGATGGTTCAGATGAAAAGAGGAGAATTGAGGCATATCAGGGAGGATCTAAAAGCCCTCCATATGTAGACACACATGAACGTCGTTATAGTGACAGGTCTAGTCCAGGTGGAAGAAGTCCTGGATATGATCAAGAAAGTAGGCAATATGGTGACTATAAGAGAAGTCCCGGTCGTCCTCCAGTTATAACTGACTGGCGCCGTGAAGATCGTAGAACATCAGATGGAGATTATAAGGCGGAAATCCAATCACCTGAGAGAGCCAGCGGACTAGGCTCCTCAAGCCCACCCGTGGTCCGACCCGTTAGAGATATTTTGGGGGAAAATGTAGTACCTCTTAGGATAAGTGGACCCCCAAAACCAAACAGCGGAAAAGCTGCAGATGCCTCAGCACTGACACAGAGAACTGCATCCTCTGGTAGTTTGGTATCGAGTAACGAAAGACGAGTAGATATTAAGCTTGAGACTACTAAGAGCCTTATTGATTTTGATGCTGATCCTGAACCTGTTGCTCCAACAATTTCTCAAGCCCAACAAACTAGTGTGCCTCAACCTTTTTTGCAGCAAGGAAATTCCAGTGATGACAATTGGGCCTCTTTTGATGTTGCTTCTGAGGTGAAAGCAAATCCAAGCGCCTCAAATTTAAATCCACTTGAATCTGAATTGTCCCAATTGTCTGTGCCAGCATCTTTACCTTCTCAGGCTTCAGGAGTCCAAGGACCTAATCCACCCAGTGGTGCTTCAGTTCCATTTCCCGGATTGGCAACTGTTAATAATGTAGGACATTGGGCCAGTTCGCAGCATCAACAACCAACATTCCCCACCGTTGCTAGTCAACAATTTCCACCGTCAGTAGGCAGTGCTGTAAATAGTCAGCCATCACATGTACCTTATGTACCCACAGGACAGGGGCATCCGAATACACCAATACCACATGCATACCATCATGTCTCAAAGTTTTCCAATGAGGGTCTCAACAGTGTTGTTTCTCAACCTTCTGCTGTAGAAGTAAAACCAAGTGGAAGAACAGAACTTCCTGAAGATCTGTTCACTGTAAAACACTCGTCCTTCCCTGCTCCAGGTCTAGGTTGGCAAATGGGTCTTCCCCAGGGCATGGGCATCTCAACGCAATATAATGCGATGCCTGTGTCAAGTTTTTCGCAGCCATCAAGGTCAACAAATCCATTTGATGTCAGCAGCAGACAAACCCCAGATCAAGCCCCAAGTTTTCCTTCCATGTCATCCTTGCATGGTGCGTTGCCTAGTTTATCGCCATCACTCCCAATGCAGCTTCCAAACCCGAGCAATCCATTGCATGCATGGAGTCCACCCCTGCCTAATGCAGGCACAATGCACTCTTCAACCCTGGGTCATCCACCAAATGCATGGACTCCTCCCCTGCAACCCTTTCAAGGTGCCCTGCCTAATATACCACCTTCAGGAACTATGTACCCTTCAAGCCAGGGCAATCCATCCCGTGCCTGGACTCCAACCCCATCGTCATCATATGCATCAGTCCTACCTCAACAAGCACACACTCATGCATCAACATTGGGATCAGGGTCATACATGGGGCAACCAATGGCAACCAACATACCAATGCCAAGGCAAGAAACTGGGAATTTTAGAACTGAGGGAGGCATTTTTGGCTTGTCAAATCCAGGTCAGCAGCTGACTGATAGCCCATCAACCACTCCCACCCCTAACTCCTTCCCTAAAGGAGGGAACCCATTCGGATAA 2142 0.4631 MASRFKEDEKNERLIRGLLRLEPNRRCINCNSLGPQYVCTNYWTFVCTNCSGIHREFTHRVKSVSMAKFTSQEVTALQEGGNQRAREIYFKEWDARNSFPDSSNVNRLRDFIKHVYVDRRFTGDSTSDKPPRGDKDGSDEKRRIEAYQGGSKSPPYVDTHERRYSDRSSPGGRSPGYDQESRQYGDYKRSPGRPPVITDWRREDRRTSDGDYKAEIQSPERASGLGSSSPPVVRPVRDILGENVVPLRISGPPKPNSGKAADASALTQRTASSGSLVSSNERRVDIKLETTKSLIDFDADPEPVAPTISQAQQTSVPQPFLQQGNSSDDNWASFDVASEVKANPSASNLNPLESELSQLSVPASLPSQASGVQGPNPPSGASVPFPGLATVNNVGHWASSQHQQPTFPTVASQQFPPSVGSAVNSQPSHVPYVPTGQGHPNTPIPHAYHHVSKFSNEGLNSVVSQPSAVEVKPSGRTELPEDLFTVKHSSFPAPGLGWQMGLPQGMGISTQYNAMPVSSFSQPSRSTNPFDVSSRQTPDQAPSFPSMSSLHGALPSLSPSLPMQLPNPSNPLHAWSPPLPNAGTMHSSTLGHPPNAWTPPLQPFQGALPNIPPSGTMYPSSQGNPSRAWTPTPSSSYASVLPQQAHTHASTLGSGSYMGQPMATNIPMPRQETGNFRTEGGIFGLSNPGQQLTDSPSTTPTPNSFPKGGNPFG 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03270 713 SUPERFAMILY ArfGap/RecO-like zinc finger 11 122 IPR037278 -
Tsu03g03270 713 SMART arf_gap_3 12 129 IPR001164 GO:0005096
Tsu03g03270 713 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 129 IPR001164 GO:0005096
Tsu03g03270 713 MobiDBLite consensus disorder prediction 517 562 - -
Tsu03g03270 713 Pfam Putative GTPase activating protein for Arf 14 122 IPR001164 GO:0005096
Tsu03g03270 713 CDD ArfGap_AGFG 12 121 - -
Tsu03g03270 713 Gene3D Arf GTPase activating protein 2 130 IPR038508 -
Tsu03g03270 713 MobiDBLite consensus disorder prediction 363 377 - -
Tsu03g03270 713 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Tsu03g03270 713 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Tsu03g03270 713 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Tsu03g03270 713 MobiDBLite consensus disorder prediction 517 555 - -
Tsu03g03270 713 MobiDBLite consensus disorder prediction 393 426 - -
Tsu03g03270 713 PANTHER ARF GTPASE ACTIVATOR 599 713 - -
Tsu03g03270 713 MobiDBLite consensus disorder prediction 309 331 - -
Tsu03g03270 713 PANTHER ARFGAP/RECO-RELATED 1 580 IPR044820 GO:0005096
Tsu03g03270 713 MobiDBLite consensus disorder prediction 121 284 - -
Tsu03g03270 713 MobiDBLite consensus disorder prediction 195 216 - -
Tsu03g03270 713 MobiDBLite consensus disorder prediction 671 713 - -
Tsu03g03270 713 PANTHER ARFGAP/RECO-RELATED 599 713 IPR044820 GO:0005096
Tsu03g03270 713 MobiDBLite consensus disorder prediction 363 426 - -
Tsu03g03270 713 MobiDBLite consensus disorder prediction 618 637 - -
Tsu03g03270 713 MobiDBLite consensus disorder prediction 684 706 - -
Tsu03g03270 713 MobiDBLite consensus disorder prediction 121 147 - -
Tsu03g03270 713 PANTHER ARF GTPASE ACTIVATOR 1 580 - -
Tsu03g03270 713 MobiDBLite consensus disorder prediction 261 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03270 Tsu-Chr3 45142142 45150156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03270 12 133 C2H2 Transcription Factor Family AT4G21160 32.812 1.19e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03270 - - mtr:MTR_6g086630 981.089
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03270 03 45142142 45150156 Tsu03g03270 03 45142142 45150156 ECH