Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03262 ATGACTGTAAAGAAACAGGACTCGAAAAAAGTTTCTGGCCTCAGCAATCAATGTTCAAGGAAGCAACATCGCAAGGGAGAAAACCCTATTCGATTTGTACCAGCTGCTGACCCTCCTCTTGATAATGGACATTCAAACTCATGGATCTGCAAAAACTCCGCTTGCAGGGCAGTTTTATCCAAAGAGGACACATTCTGTAGACGGTGCTCTTGCTGTATTTGCCATCTTTTCGACGACAACAAGGATCCTAGTCTTTGGTTGGTATGCAGCGAATCTTCTCAAGGGGACTCATGCGGATTATCTTGCCATATTGAGTGTGCTCTTCAACATGAGAAAGTTGGAGTTGTTGATCATGGACAACTTATGCAATTGGATGGCGGTTATTGTTGTGCCTCCTGCGGTAAAGTTACCGGCATACTTGGATGCTGGAAGAAGCAGCTTAATATAGCGAAAGATGCTCGGCGTGTGGATGTACTATGTTACAGGATATATTTGAGTTACAGGCTTCTGAACGGTACTTTGAGATTTAAAGAATTGCATGACATGGTACAAGAGGCAAAAGCTAAACTCGAAAAGGAAGTTGGTCCAGTTAATGGTGTTTCTTCCAAGATGGTACGCGGCATTGTCAGTAGACTCCCTATTGCCAGCGATGTGCAGAAACTATGTTCTCTTGCTATCGAGAAAGCAGATGAGTTGTTGGCCACTGATGACAATCCGGAATCCAAAGAGGGTTCACTTCCTGCGGCATGTAAGTTTGTGTTTGAAGAGATAACAGATTCCTCGGTCAAAATCATTCTACTTGAAATGCCAAATGTAGCTTCTGAGGACATTAAGGGATACAAGCTCTGGTATTACAAGACTAGGGGGGAATCACACACAGAAGAACCTGTTTGTGTGTTTCCAAAAGATCAGAGGAGGATTTTGATATCCAATCTTCAGGCTTGCACAGAATATACTTTTCGGATTGTATCTCATACAGATAACGGTGACCTCGGTCATTCTGAGGCTAAGTGTTTCACCAAAAGTGTTGAGATATTTGTAAAGAAACCGACTTCATCAATTGACATGAATACTAAAACGGAGGATACTCAAAATGGAGGAGGCAATGAATCGGGCTCCAAACTGGAGATTGATCCCACAATGACATACTCCGGATTCAAGGTTCGAGACCTTGGAAAGATTTTGCACCTAGCTTGGGCTCAAGAACAAGGTTGCTTTGAGGGGTTCTGCCGCGCCGATATAAAAAATTGCTGTGGTCAAAGTGAAAAGATCAAAAACCCTATCAACCTGGAAGAGCAGTCGGCACCGCCTATGGTTTCTCGAGACCTTGATCTGAATGTTGTTTCTGTGCCTGACTTAAACGAAGAACTCACTCCTCCGTTTGAGTCTTCTCGTGATGAAGACAATGGTTGCACTTTGCAGCAGGCTGTTGAGGCAGATGATGATGCAGCCTCTCATGATTTAGAGAAAAACCTTGCAAGGCCACACGGTAGTGGTGGTTCCGAAACCTGGAACCACAGACCAACTGGAGAAGTTCCGGCTGTTGACTCGCGCATAGTCGTAGAAGCAAGTAGGAAAAGGGTAGCAAGCACAAATGAAGAAACACATGACTGTGATAGCACTTTAATCAACGGTTCTCCTTTACATGTATCTGATGGTTCGTTCTCCCTAGACGAGAACTTTGAGTATTGTGTTAAAGTAATTCGTTGGCTAGAATGTCAGGGTCATATCAACAAAGAGTTTAGGTTGAAATTGCTTACATGGTTTAGTTTGAGGTCGACCGAACAAGAACGTAGGGTGGTTAATACTTTCATTCAGACACTGATCGATGATCCGAGTAGTTTGGCAGGTCAACTAGTTGACTCATTTTCCGATATTATATCCAACAAAAGGCCAAGAAATGGATTCAGTAACAAGGCTGTGGCATTAAATTAA 1935 0.432 MTVKKQDSKKVSGLSNQCSRKQHRKGENPIRFVPAADPPLDNGHSNSWICKNSACRAVLSKEDTFCRRCSCCICHLFDDNKDPSLWLVCSESSQGDSCGLSCHIECALQHEKVGVVDHGQLMQLDGGYCCASCGKVTGILGCWKKQLNIAKDARRVDVLCYRIYLSYRLLNGTLRFKELHDMVQEAKAKLEKEVGPVNGVSSKMVRGIVSRLPIASDVQKLCSLAIEKADELLATDDNPESKEGSLPAACKFVFEEITDSSVKIILLEMPNVASEDIKGYKLWYYKTRGESHTEEPVCVFPKDQRRILISNLQACTEYTFRIVSHTDNGDLGHSEAKCFTKSVEIFVKKPTSSIDMNTKTEDTQNGGGNESGSKLEIDPTMTYSGFKVRDLGKILHLAWAQEQGCFEGFCRADIKNCCGQSEKIKNPINLEEQSAPPMVSRDLDLNVVSVPDLNEELTPPFESSRDEDNGCTLQQAVEADDDAASHDLEKNLARPHGSGGSETWNHRPTGEVPAVDSRIVVEASRKRVASTNEETHDCDSTLINGSPLHVSDGSFSLDENFEYCVKVIRWLECQGHINKEFRLKLLTWFSLRSTEQERRVVNTFIQTLIDDPSSLAGQLVDSFSDIISNKRPRNGFSNKAVALN 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03262 644 MobiDBLite consensus disorder prediction 1 19 - -
Tsu03g03262 644 Gene3D Immunoglobulins 240 344 IPR013783 -
Tsu03g03262 644 Pfam Fibronectin type III domain 252 332 IPR003961 GO:0005515
Tsu03g03262 644 ProSiteProfiles Fibronectin type-III domain profile. 246 345 IPR003961 GO:0005515
Tsu03g03262 644 SUPERFAMILY Fibronectin type III 252 330 IPR036116 GO:0005515
Tsu03g03262 644 MobiDBLite consensus disorder prediction 355 376 - -
Tsu03g03262 644 MobiDBLite consensus disorder prediction 1 31 - -
Tsu03g03262 644 PANTHER VIN3-LIKE PROTEIN 2-RELATED 2 640 IPR044514 GO:0010048|GO:0040029
Tsu03g03262 644 CDD FN3 251 330 IPR003961 GO:0005515
Tsu03g03262 644 PANTHER VIN3-LIKE PROTEIN 1 2 640 - -
Tsu03g03262 644 Pfam PHD - plant homeodomain finger protein 50 167 IPR032881 -
Tsu03g03262 644 MobiDBLite consensus disorder prediction 490 515 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03262 Tsu-Chr3 44989970 44998401 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03262 46 635 PHD Gene Family AT3G24440 49.256 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03262 - - gsj:114418583 1089.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03262 03 44989970 44998401 Tsu03g03262 03 44989970 44998401 ECH
Tsu02g00186 02 1588736 1604163 Tsu03g03262 03 44989970 44998401 PCT