Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03255 ATGTCGAGATCAATTGTTCAACCAATAGGTCAAAAGCGATTAACAAACGTAGCAGTTGTGCGTCTCAAGAAACATGGAATGCGATTTGAAATCGCTTGTTACCCTAACACCGTTCTTTCATGGCGTTCTGGAGTTGAAAAAGATATTGATGAAGTGTTGCAGTCTCATACCGTTTATACAAATGTTTCTAAAGGCGTTCTTGCTAAGTCTAAGGATTTGAATGCTGCTTTTGGTACTGATGATCATTCCAGCATATGCTTAGAGATTTTAAAGAAAGGGGAACTTCAGGTTGCTGGCAAAGAGAGGGAGTCGATGCTGTCTAGTCAGTTCAGGGACATTGCCACCATTGTAATGCACAAGACTTTTAATCCCGAGACTAAACGCCCTTACACTATCAGCATGATTGAACGCCTCATGAGGGATATCCATTTCGCCGTTGATCCAAATAGCACCTCCAAGAAACAGGCTCTGGAGTTGATTCAGGAGCTTCAGAAGCACTACCCTATAAAACGATGTCCATTGAGGGTACGTGCTGCTGCCCCTGAGGAGCAAGTACCCGTCCTTTTAGAAAAACTGAGTGAGTGGAAGGCAACTGTTATTTCTCAAGAAGGGACTGCTGCTCAGTTATCTGTTGTTTTTGAATTGGAACCTGGTCTGTATAAGGATTGTCACGACTTTGTTATGAATAAGATGCATGGAAGATTTGAAGTTCTTGCTCACTCTCTTTATGTGGATGGGGATACTCATGTGGATTACAATGATAATGAGGACATGCCTGCACCGTTGCCCCAAAAAACTCCTGAATCTGAGATTGAGTTGAATGATAAACTTCAAAAGCAAACAATTTCGTCTGTAACTAAGCCTACTGAGGGACAACAACCAAAGCAAAACAAGTGCAACACCTGTGATGTTTTCTTTGAAGATGCTAAGCTGTACCGGGAACACCACAAGAGTGAGTGGCACAAGCATAATATGAAGCGTAAAACGAGACAACTCCCTCCACTCACGGAAGAAGAATGCACTGCAGATATGGATTTGTTTGAATCAAAATCTGATTTGAAGGATTATTCATTTTGA 1077 0.4178 MSRSIVQPIGQKRLTNVAVVRLKKHGMRFEIACYPNTVLSWRSGVEKDIDEVLQSHTVYTNVSKGVLAKSKDLNAAFGTDDHSSICLEILKKGELQVAGKERESMLSSQFRDIATIVMHKTFNPETKRPYTISMIERLMRDIHFAVDPNSTSKKQALELIQELQKHYPIKRCPLRVRAAAPEEQVPVLLEKLSEWKATVISQEGTAAQLSVVFELEPGLYKDCHDFVMNKMHGRFEVLAHSLYVDGDTHVDYNDNEDMPAPLPQKTPESEIELNDKLQKQTISSVTKPTEGQQPKQNKCNTCDVFFEDAKLYREHHKSEWHKHNMKRKTRQLPPLTEEECTADMDLFESKSDLKDYSF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03255 358 SUPERFAMILY beta-beta-alpha zinc fingers 294 345 IPR036236 -
Tsu03g03255 358 TIGRFAM RNA_SBDS: rRNA metabolism protein, SBDS family 13 232 IPR002140 GO:0042256
Tsu03g03255 358 Gene3D - 100 172 IPR037188 -
Tsu03g03255 358 SUPERFAMILY Hypothetical protein AF0491, middle domain 98 171 IPR037188 -
Tsu03g03255 358 Gene3D - 174 251 - -
Tsu03g03255 358 Pfam SBDS protein, C-terminal domain 175 238 IPR046928 -
Tsu03g03255 358 Gene3D Classic Zinc Finger 286 345 - -
Tsu03g03255 358 SUPERFAMILY FYSH domain 13 96 IPR036786 -
Tsu03g03255 358 PANTHER BNAANNG06530D PROTEIN 1 358 - -
Tsu03g03255 358 PANTHER RIBOSOME MATURATION PROTEIN SBDS 1 358 IPR039100 -
Tsu03g03255 358 Pfam SBDS protein, domain II 111 171 IPR018978 GO:0042254
Tsu03g03255 358 Pfam Shwachman-Bodian-Diamond syndrome (SBDS) protein 16 102 IPR019783 -
Tsu03g03255 358 ProSitePatterns Zinc finger C2H2 type domain signature. 299 321 IPR013087 -
Tsu03g03255 358 ProSitePatterns Uncharacterized protein family UPF0023 signature. 46 65 IPR018023 -
Tsu03g03255 358 Gene3D - 1 96 IPR036786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03255 Tsu-Chr3 44869779 44873785 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03255 27 358 C2H2 Transcription Factor Family AT1G43860 56.812 6.97e-138 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03255 K14574 - gmx:100797497 621.698