Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03245 ATGTTCACATCAAGGAAGAAAATCAGCAAAGATAAGGGTGCTGAGCCAACTGAATTTGAGGAATCGGTTGGACAGGCTTTGTTTGATCTAGAAAATACAAACCAGGAGTTGAAAAGTGAGCTGAAggatttatatataaattcagCAGTCCAAATTGATGTTTCTGGCAACCGCAAGGCTGTGCTTATCAATGTCCCCTTCAGATTGAGGAAGACTTACCGCAAAATTCAAGTCAGGCTTGTTAGGGAGCTTGAGAAGAAATTTAGCGGCAAGGATGTAATCCTGATTGCCACCAGGAGGATTGTAAGGCCTCCAAAGAAAGGTTCCGCTGCTCAGCGCCCCCGTAGCCGCACACTCACTGCTGTGCACGAGGCAATTCTGGAGGATGTCGTATTTCCTGCTGAGATTGTTGGAAAGCGTATTAGATACCGAGTTGATGGATCAAAGATCATGAAGGTGTTCTTGGACCCTAAGGAGAAGAACAACACCGAATACAAACTGGAGACATTTTCTGCAGTTTACAGAAAACTTTCAGGCAAAGATGTTGTGTTTGAGTATCCTGTTACTGAGGCTTAG 576 0.4323 MFTSRKKISKDKGAEPTEFEESVGQALFDLENTNQELKSELKDLYINSAVQIDVSGNRKAVLINVPFRLRKTYRKIQVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAAQRPRSRTLTAVHEAILEDVVFPAEIVGKRIRYRVDGSKIMKVFLDPKEKNNTEYKLETFSAVYRKLSGKDVVFEYPVTEA 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03245 191 ProSitePatterns Ribosomal protein S7e signature. 79 92 IPR000554 GO:0003735|GO:0005840|GO:0006412
Tsu03g03245 191 Coils Coil 27 47 - -
Tsu03g03245 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 IPR000554 GO:0003735|GO:0005840|GO:0006412
Tsu03g03245 191 PANTHER 40S RIBOSOMAL PROTEIN S7 2 191 - -
Tsu03g03245 191 Pfam Ribosomal protein S7e 7 186 IPR000554 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03245 Tsu-Chr3 44804028 44805895 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03245 1 191 Cytoplasmic Ribosomal Protein Gene Family AT1G48830 79.581 1.60e-115 324
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03245 K02993 - fve:101291712 343.584