LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu03g03242	ATGACAGAACCTGCATCTACTACGGCATCTTGCAGTGAAAGCTCGTTGCTGCCTCCGGAAATAGCAATTGGAATTGACATTGGCACCACAACAGGCTGTATTTCTGTTTGGAATGGTTCCGAATTTGAGGTTTGGATAGATCAAATGAATGAGATGATGAGGAGATGTTCCGAAACTTCCAAAGATCATGACTTTTCTATTGGAGCTAGTAGTAGCAGCAGTAGTAGTACTGAAGTCTCACTCGAGAATGAGAATGTGAATCAGTTCTTTAACATAATTTTCAGTGAAAGAGCAAATTTTCCATTTCTGATGCACATCGTGGACATTGAGGTTCGCCCTTTTGTTGCTGCATTTATGAAGAAACTGTGGAGATCCACTACTGCAGTAGAAATACTTGGAAAATTTCTAACGGAATTAAGATCAATGGTTGAAACTCAGCTGAACGGACCTATAAAAAAGGTAGTGTTCACAGTTCCGGTTTCATTCAGTCGATTGCAGGTAAACCGGATACTTCGCGCTTGTGAGATGGCCGATCTTAAAGTTATCAAACTGATGCCTCAACCAATAGCAGTGGCTTTGTGGTATGCGAGTCATCCGCTGTACGCTTCTGCTTCTTCTCATGAGGTTATGGACAATGAAAGCAAGAAAATCGCTCTCATTTTCAATATGGATGCCGGTTATTGCGATGTTTCTGTTATTGAAGCAGAAAGAAGAAAATTGCGAATAAAAGCCTTGACAGGAAGTACTATTGGTGGAGAAGATTTGCTTGGAAATATGATGTGTCATCTTTTACCTAATTTTGAAGAGATATTCAAGAGAGATGTTCACTGGAACTCAGATATTTTAGCGATGGCTTTTCTTCGAAGTAGAATCCACGATGTGATTACCGAGCTTTCGACTGAGACAAGTGTGGAGGTCGATTTAGAGTCTATAGATGGTTTAAAGATACAAAGGGTTGTAAGGAGGGAGGACTTTGAGGATGTAAACAAAGATGTGTTTGAGAAGTGTAAAAACCTAATCATCGAATGCTTGGAAGATGCGAAGATAGAAGCCGAGAATATAAATCATGTGATAATTGTAGGCAGATGTTGCAATATACCGAGGGTGGAGAATCTTGTTACAGAAATATGCAATGGAAAGGAAATTTATAAAGGTATAGATCCTTTGAATGCTGTACTTTGTGGTGCAGCAGTGGCAGCTGATAACTTTGAATTTCTTACTTCTCAAGTGACACTTCATGCCATCGGAATTCGAGCTTATGGGAAGAAATTTGTACCTGTTATTCCGAAGAACACATCAATGCCAACGATGTGGGATATGGCGTTTTCAACTGTTAATGATAATCAAACTACGGCATCGATTGTTGTCTGTGAAGGCGCTGAGGGACAAAAGGCTGAAGAAAACAATGTTTTGGGAAATTTCGAAATAACTGAAATACCTGAAGCACCAAAAGGAGTTCCTGAAATCACTGTTTCCATGAGCATAGACCGTAAAAACATATTGACAGTTACTGCTTTTGTTGGGATGCCAAGATGTACTCCTGTAGTTACAAAGTTTGATGATCAGTTGCTAATTAGAACATATGATTATACAATAAGATTTGGCTAA	1608	0.393	MTEPASTTASCSESSLLPPEIAIGIDIGTTTGCISVWNGSEFEVWIDQMNEMMRRCSETSKDHDFSIGASSSSSSSTEVSLENENVNQFFNIIFSERANFPFLMHIVDIEVRPFVAAFMKKLWRSTTAVEILGKFLTELRSMVETQLNGPIKKVVFTVPVSFSRLQVNRILRACEMADLKVIKLMPQPIAVALWYASHPLYASASSHEVMDNESKKIALIFNMDAGYCDVSVIEAERRKLRIKALTGSTIGGEDLLGNMMCHLLPNFEEIFKRDVHWNSDILAMAFLRSRIHDVITELSTETSVEVDLESIDGLKIQRVVRREDFEDVNKDVFEKCKNLIIECLEDAKIEAENINHVIIVGRCCNIPRVENLVTEICNGKEIYKGIDPLNAVLCGAAVAADNFEFLTSQVTLHAIGIRAYGKKFVPVIPKNTSMPTMWDMAFSTVNDNQTTASIVVCEGAEGQKAEENNVLGNFEITEIPEAPKGVPEITVSMSIDRKNILTVTAFVGMPRCTPVVTKFDDQLLIRTYDYTIRFG	535

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu03g03242	535	Gene3D	-	211	383	-	-
	Tsu03g03242	535	Gene3D	-	23	399	-	-
	Tsu03g03242	535	Gene3D	Substrate Binding Domain Of DNAk; Chain A, domain 1	400	512	IPR029047	-
	Tsu03g03242	535	Gene3D	-	84	134	-	-
	Tsu03g03242	535	PANTHER	HEAT SHOCK 70 KDA PROTEIN 8	11	517	-	-
	Tsu03g03242	535	SUPERFAMILY	Actin-like ATPase domain	216	401	IPR043129	-
	Tsu03g03242	535	Gene3D	Actin; Chain A, domain 4	252	335	-	-
	Tsu03g03242	535	PRINTS	70kDa heat shock protein signature	226	236	-	-
	Tsu03g03242	535	PRINTS	70kDa heat shock protein signature	354	370	-	-
	Tsu03g03242	535	PRINTS	70kDa heat shock protein signature	486	502	-	-
	Tsu03g03242	535	PRINTS	70kDa heat shock protein signature	386	406	-	-
	Tsu03g03242	535	PRINTS	70kDa heat shock protein signature	21	34	-	-
	Tsu03g03242	535	PANTHER	HEAT SHOCK PROTEIN 70KDA	11	517	IPR013126	GO:0005524\|GO:0140662
	Tsu03g03242	535	Pfam	Hsp70 protein	22	505	IPR013126	GO:0005524\|GO:0140662
	Tsu03g03242	535	SUPERFAMILY	Actin-like ATPase domain	21	196	IPR043129	-
	Tsu03g03242	535	CDD	HSP70_NBD	23	400	-	-
	Tsu03g03242	535	SUPERFAMILY	Heat shock protein 70kD (HSP70), peptide-binding domain	410	507	IPR029047	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu03g03242	Tsu-Chr3	44784065	44785672	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu03g03242	22	505	Calmodulin-binding Proteins	AT3G12580	30.739	1.58e-66	225

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu03g03242	K09489		-	gmx:100809773	466.077