Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03224 atggcTGAATTCacagaaaattttcaaaatattattagaccctcttttccttttcttgattCTGATCAAAGTATGGAACTTTTGAATCAATTCATGGAGAATTCAAACATGAATATGATGCAAAATTTGATGCCTTTTTCTTGTGACAGCATCTTggaacatcatcaacaacaggAACATGAGTTGTTTCCAAGAAACATGCAAGAAAATTTTCATGGtcttgttcatcatcatcatgttaATAATCACAATGCAGTTCAAGTTTCAATTCCAACAATTTTTcaagaagaaaataaagttCATCATGATggtaaaaagagaaaaatgatggaTTTTCAAGAAACTAGTTCTGCAAATTCAACTCCTGCAGTTTCTGAGAGTGGAAGCAAAACcaaacatAGTGGTGGAAGAGGAAAAAGAGTGAAAAGCTATGAAACAGAAGAAGAGAAAGCAAAGGAAGTTGTTCATGTTAGAGCAAGAAGAGGTCAAGCTACTGATAGTCACAGTTTAGCAGAAAGGGTTAGAAGAGGGAAAATCAATGAGAAATTGAGGTGTTTGCAGAATATTGTTCCTGGATGTTACAAgACCATGGGAATGGCAGTAATGTTGGATGAAATCATAAACTATGTTCAGTCTTTGCAGCATCAAGTAGAGTTTCTATCTTTGAAGCTTACTGCAGCAAGCACTTATTATGACTTCAATTCAGAGACAGATGATTTGGAAACAATGCAGAGAGCAAGGGCATCTGAGGCAAAAGAATTAGCAAGGTATAAGAGAGAAGAATATGGAGGAATTTCATGCTTTCAACCAACATGGCCTCTTTGA 825 0.2994 MAEFTENFQNIIRPSFPFLDSDQSMELLNQFMENSNMNMMQNLMPFSCDSILEHHQQQEHELFPRNMQENFHGLVHHHHVNNHNAVQVSIPTIFQEENKVHHDGKKRKMMDFQETSSANSTPAVSESGSKTKHSGGRGKRVKSYETEEEKAKEVVHVRARRGQATDSHSLAERVRRGKINEKLRCLQNIVPGCYKTMGMAVMLDEIINYVQSLQHQVEFLSLKLTAASTYYDFNSETDDLETMQRARASEAKELARYKREEYGGISCFQPTWPL 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03224 274 Coils Coil 240 260 - -
Tsu03g03224 274 MobiDBLite consensus disorder prediction 113 131 - -
Tsu03g03224 274 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 161 230 IPR036638 GO:0046983
Tsu03g03224 274 MobiDBLite consensus disorder prediction 138 169 - -
Tsu03g03224 274 MobiDBLite consensus disorder prediction 113 169 - -
Tsu03g03224 274 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 163 213 IPR011598 GO:0046983
Tsu03g03224 274 SMART finulus 169 219 IPR011598 GO:0046983
Tsu03g03224 274 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 273 IPR024097 GO:0006355
Tsu03g03224 274 Gene3D - 159 231 IPR036638 GO:0046983
Tsu03g03224 274 Pfam Helix-loop-helix DNA-binding domain 167 214 IPR011598 GO:0046983
Tsu03g03224 274 CDD bHLH_AtBPE_like 153 238 - -
Tsu03g03224 274 PANTHER TRANSCRIPTION FACTOR BEE 1 2 273 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03224 Tsu-Chr3 44462216 44464726 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03224 45 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G73830 53.252 4.95e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu03g03224 HLH 0.00018 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03224 - - gmx:100806942 397.897