Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03214 ATGGAGGAAAATCTACCTCCTGGATTTAGGTTTCATCCAACAGATGAAGAACTCATAACACACTATCTTACAATGAAAATTTCTGATTCTTCATTCACATCAAAAGCTGTTGCAGTTGTTGATCTTAACAAGTGTGAACCTTGGGATCTTCCAGGTAAAGCTTCAATGGGGGAAAAAGAATGGTATTTCTTCAGTGTGAGAGATAGAAAATATCCAACTGGACTTCGAACAAATCGAGCCACTGAATCAGGGTATTGGAAAACAACCGGAAAAGACAAAGAAATATTTCGCGGTGGAGTTTTGGTAGGAATGAAGAAAACCCTAGTGTTTTATAAGGGTAGAGCTCCAAGGGGTGAGAAAAGTAATTGGGTCATGCATGAATATAGACTAGAAAACAAACACCACTTTCGAACTTCAAAGGATGAATGGGTGGTTTGTAGGGTTTTTCAAAAGAGCATAGCAATAAAAAAACCACAACAAACATCATCCTCCCAACCAGAATCTCCATGTGACACAACCTCAATGGTGAATGAATTTGGTGATGTTGAACTTCCAAATCTAAATGGTAttacaaattcatcatcatgtGGATTCACTAACATTGGACAAACATTTAACACTCATGATCATCTCACTAATAATGTTAACACAAATATGAACTTAACAATGAACTGGCCATCTTCAAGTGAAGTTCCATCTCTACCATGGCCTTCTAATTTGCTTAATCCTAATAATATTTCTGTAAATTCATTGCTTTTAAAAGCATTACAACTTAGGAATTATCAACAACAAAGAGAAGTTGCAACTACAAATCATTTTGTGCCATACATGCCTCAACAAGGAGTTATATCTCATCACCTTGGAAATGACTTAAGTAATAATTCAAATGATCTAAGTGCTTCTTCTTCAAAAGTTTTAGAATGTATGCCACAACATCAACAAGAGCAACCATTCAATTTGGACTCAATTTGGTGA 975 0.3518 MEENLPPGFRFHPTDEELITHYLTMKISDSSFTSKAVAVVDLNKCEPWDLPGKASMGEKEWYFFSVRDRKYPTGLRTNRATESGYWKTTGKDKEIFRGGVLVGMKKTLVFYKGRAPRGEKSNWVMHEYRLENKHHFRTSKDEWVVCRVFQKSIAIKKPQQTSSSQPESPCDTTSMVNEFGDVELPNLNGITNSSSCGFTNIGQTFNTHDHLTNNVNTNMNLTMNWPSSSEVPSLPWPSNLLNPNNISVNSLLLKALQLRNYQQQREVATTNHFVPYMPQQGVISHHLGNDLSNNSNDLSASSSKVLECMPQHQQEQPFNLDSIW 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03214 324 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 2 261 - -
Tsu03g03214 324 PANTHER BNACNNG63190D PROTEIN 2 261 - -
Tsu03g03214 324 SUPERFAMILY NAC domain 3 151 IPR036093 GO:0003677|GO:0006355
Tsu03g03214 324 ProSiteProfiles NAC domain profile. 5 151 IPR003441 GO:0003677|GO:0006355
Tsu03g03214 324 Gene3D NAC domain 14 154 IPR036093 GO:0003677|GO:0006355
Tsu03g03214 324 Pfam No apical meristem (NAM) protein 6 130 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03214 Tsu-Chr3 44346813 44349837 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03214 1 324 NAC Transcription Factor Family AT3G18400 59.172 4.21e-120 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu03g03214 NAM 3.3e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03214 - - gmx:100787111 461.84