Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03200 ATGGCAAAGGCAAGGGATAGGACTGAGGACTTCAAAGATGCCGTGCGCCAAAGTGCTCGCTCTTTGGGGTATGATGAGGCTAAATTGGCATCCATTTTAGCATCTTTTATCATTCATAAACCTCCACAAAGGTCCCCATTCACCAAAGCTGCATATAAGACGCTCGATAGTATTGGAGAATTGGACCATTTTTTGTTAAAGCATAGAAAGGACTATACAGATCTGCACCGAACAACGGAACATGAGAGAGATAGCATTGAGAATGAAGTTAGTGCTTTTATTAAAACTTGCCAGGAACAAATTGACGTTCTTAAGAATAGTATAAACAATGAAGAGGAAAACTCAAAAGGTTGGCTTGGCATCACAACTGCAAAGGCTAACGCCGACACCATTGCCCACAAACATGGGGTGgttctAATTTTAAGTGAGAGGCTTCATTCGGTTACGGCACAGTTTGATCAACTCAGAGCTATACGCTTCCAGGATGCTATTAATAGGGCAATACCACGAAGAAAACTTAATCGTGTAACCAGGAAAGATTCTGCGGAAACCTCTAATTCAGGTGATGTGGAGCTCAGAGAACCAGATGAGTTGCGCAGTGAGCCTCTAAGAGTCCAACAGCAACTCTTGGATGATGAAACACGTGCCCTTCAGGTGGAATTGTCTAATCTTCTAGACACAGTTCAAGAAACTGAAACTAAGATGGTAGAAATGTCTGCATTAAATCACTTGATGGCTACACATGTTTTGCAACAAGCTCAACAAATTGAGCATCTGTATGACCAGGCTGTTGAAGCTACCAAGAATGTTGAGCTTGTTATGGAAGATGAACCTCCACGACAACTTGACATTGTTCCGGTTCCAGTTCAACCGCCAGCAATATCAATTGACACCGGAAATCATTTTGCGACTGAGGCTAAAGAGGAGTCCAAAGAAGTTTTGATCGAATGGGCTCGCAAAGTAGCagaaaaattgaagtttaccaTTATAATTAGGAGATCGGACAACGGCGGGGATAAGAGTAGAAAGCCGTTTTTTGTGTTGGAGTGTGAACGGAGCGGCAAGTACGTGCCACctaaaaagaagttgaaatCCAATTTTACGGGAACTAGGAAGTGTGGATGTCCATTCCGACTTCGTGGTTATtacacaaaagaaacaaagttatGGCATATGACAGTGGTGAATGGCATACACAACCACGAGTTGGACACTGAGCTTGAGGGGCATCTTGTGGCGGGTCAGTTGAAGCCGGAAGAAAAGGTATTATTGGATGAAATGACCAGGAATCTTGTTTCACCAAGAAATATCATCTCGACATTGAAAGATAGAGATCCCGATAACACGATGTCATCAAAGCAAGTATACAACGCCCGGTATATGTATAAAGATAAAATGAGGGCGTCCATGAGTGAAATGcaacacatgttcaaacatTTGGGCGTGACCTGtttcggttcgtaa 1464 0.4071 MAKARDRTEDFKDAVRQSARSLGYDEAKLASILASFIIHKPPQRSPFTKAAYKTLDSIGELDHFLLKHRKDYTDLHRTTEHERDSIENEVSAFIKTCQEQIDVLKNSINNEEENSKGWLGITTAKANADTIAHKHGVVLILSERLHSVTAQFDQLRAIRFQDAINRAIPRRKLNRVTRKDSAETSNSGDVELREPDELRSEPLRVQQQLLDDETRALQVELSNLLDTVQETETKMVEMSALNHLMATHVLQQAQQIEHLYDQAVEATKNVELVMEDEPPRQLDIVPVPVQPPAISIDTGNHFATEAKEESKEVLIEWARKVAEKLKFTIIIRRSDNGGDKSRKPFFVLECERSGKYVPPKKKLKSNFTGTRKCGCPFRLRGYYTKETKLWHMTVVNGIHNHELDTELEGHLVAGQLKPEEKVLLDEMTRNLVSPRNIISTLKDRDPDNTMSSKQVYNARYMYKDKMRASMSEMQHMFKHLGVTCFGS 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03200 487 PANTHER SYNTAXIN-18 5 271 - -
Tsu03g03200 487 PANTHER SYNTAXIN-18 5 271 - -
Tsu03g03200 487 SUPERFAMILY t-snare proteins 56 271 IPR010989 GO:0016020|GO:0016192
Tsu03g03200 487 Pfam SNARE-complex protein Syntaxin-18 N-terminus 6 86 IPR019529 -
Tsu03g03200 487 Pfam Transcription factor AFT 360 403 IPR014842 GO:0000981|GO:0036086
Tsu03g03200 487 MobiDBLite consensus disorder prediction 175 198 - -
Tsu03g03200 487 Coils Coil 94 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03200 Tsu-Chr3 44219295 44226497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03200 65 272 SNARE and Associated Proteins AT1G51740 73.684 7.96e-98 293
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03200 K08492 - gmx:100778011 474.552