Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03158 ATGGCGACGCCGTTAATCCCGCAGCAACTCTTAGATGGCGGTGGAGGAGTGGCGGTTCTGTCGAATCTcgttccttcttcttcttcttcttcctcctcctccaATGGTGGTGGTGGATTCAACCGTTCCTCTTTATCGGAATCGCCAATTTTGATTTTCTCGTTCTTCCAAAAAGCGATTCGGAACGAGCTTGATGCGTTGCATCGATTAGCTTTGGCTTTTGCTACTGGAAATCGTTCTGATATTCAACCTCTCTCTGAACGCTACCATTTTCTTAGATCGATGTATAAACACCATTCCAATGCTGAAGATGAGGTGATTTTTCCAGCTCTAGATAAGCGTGTGAAGAATGTAGCACAAACATATTCTCTTGAACACAAGGGTGAAAGCAATCTTTTTGACCATTTATTTGAGCTTTTAAACTCTCCCGATGATAATGATGAAAGTTTCCGAAGGGAGTTAGCGTCTTGCACTGGAGCTCTGCAGACATCTGTTAGTCAACACATGGCTAAGGAGCAGCAGCAAGTGTTTCCGCTTCTTATTGAGAAGTTCTCACTGGAGGAACAAGCATCTTTAGTTTGGCAATTTCTTTGCAGTATTCCAGTGAATATGATGGCCGAATTTCTTCCATGGCTTTCCACATCCATATCCCCCGATGAATCTCAGGATTTACGGATGTGCTTAAGCAAGATAGTGCCAGAAGAAAAGCTTCTTCAAAAGGTTATTTTCACCTGGATGGATGGGAGAAGTAGTGCTAACACGGTTGAAAATTGTGTAGATAATTCTCAGGTTCAATGTAGTCCTAGTCCTTTAGCCCATCAGATTGGGAAAATAAATTGTGCATGCGAGTCCACTGTATCTGGGAAAAGAAAATACTCTGCATCTATTCTAGATGCTCCTGAGACAATGGGTTCACATCCTATAGATGAAATATTGCTCTGGCATAATGCTATAAAAAAAGAGTTGAATGAGATAGCAGTGGAGACCAGAAAGATACAACACTCAGGAGATTATACTAATCTGTCTGCCTTTAATGAAAGGCTGCAATTCATAGCTGAAGTTTTCATATTTCATAGTATTGCTGAGGACAAGGTTATTTTTCCGGCAGTAGATGgagatttttctttctttcaggAACATGCTGAAGAAGAAAGTCAATTTAATGACTTCCGATCTTTGATTGAAAGAATTCTAAGTGAAGAAGCAACATCTAGTTCAGAAGTTGAACTTTATTCCAATTTGTGCTCACATGCTGATCATATAATGGAAACCATACAGAGGCATTTCCATAATGAAGAAGTTCAGGTTCTTCCACTTGCACGGAAGCACTTTAGCTTCAAAAGGCAACGTGAACTAGTATATCAAAGCTTGTGCATGATGCCTCTGAAATTGATTGAGCGTGTCCTGCCATGGTTTGTTGGATCATTAACTGAAGTTGAAGCAGAGATATTTCTGAAAAACATACAATCGGCAGCTCCAGCAATCGATTCTGCTTTAGTCACACTCTTCTCTGGTTGGGCTTGCAAAGCTCGTAAAAATGGTCAGTGCTTGTCTTCAAGTGAATCAGGTTTCTGTCCTGCTAAAAAAATTGTCCGGTCTTCCTGTACTTGTCCTTCTGCATTGTCCGGTAAAGATTGCCCAATATTAGCTGAATCAGACGGGACCCAAAGATCAGCAAAGCGAAACATGTTGGAATTGCACAAAAATGGAGATGTCTCAAAAACATCAGAAAATGAATGTACCCAGAAACCATGCTGTGGTGCCCGGTCTTGTTGTGTGCCAGCTTTAGGGGTCAACAGTAACAATTTGGGGCTGAGTTCACTTTCTGCTGCCAAGTCCTTAAGGAGCTTCACTTCTTCTGCCCCATCTCTTAATTCTAGTCTTTTCATATGGGAAACAGACAGCAGCTCATGTGATGTTGGCTCTGCAGAAAGACCAATTGATACCATATTTAAATTCCATAAAGCTATACGCATAGATCTGGAGTATTTAGATGTTGAATCTGGAAAGCTTTGTGATGGTGATGAAACAACCATTCGGCAATTTACTGGAAGATTTCGTCTTTTATGGGGTTTATATAGAGCTCACAGTAATGCTGAAGATGATATAGTTTTTCCTGCATTGGAATCCAAAGAGACACTTCATAATGTGAGCCATTCATACACGCTGGACCATAAGGCGGAAGAAAAGTTATTTGAAGATATTTCTTGCGTGCTCTCTGAGCTTTCTGTTCTTCATGAAGCAATGCAGAGGACCCATATGTCAGAGGATTTAAGCAAAAGTGATTTGGGAATATCTGATGCCAATGATAGCGATGATATCAGAAAGTACAACGAGCTTGCAACTAAGCTTCAAGGGATGTGTAAATCTATACGAGTGACCCTGGATCAGCATATTTTCAGGGAAGAGCTTGAGCTCTGGCCATTGTTTGGAAAACATTTCACTGTTGAAGAACAAGACAAGATAGTGGGCCGGATAATTGGAACTACAGGGGCTGAAGTTCTCCAATCAATGTTACCATGGGTGACTTCTGCACTTACACAAGATGAACAGAACAAAATGATGGACACATGGAAACAAGCAACTAAGAATACAATGTTTAATGAATGGCTAACTGAATGCTTGATAGAGAGTCCAGGATCTACATCACAGACAGAAACATCTGAACGTAGCACTTCTCAAAGAGGTGCTGAATATCAAGAAAGCTTGAACCTGAATGATCAGATGTTTAAGCCGGGTTGGAAAGACATATTCCGGATGAATGAGAATGAAATTGTATCTGAAATCCGGAAGGTTTATCGTGACTCAACCCTTGATCCAAGGAGAAAGGCATATCTGGTGCAGAATCTAATGACAAGTCGCTGGATAGCTGCCCAGCAGAAGTTACCTAAATCTCAATCTGGGGAATCATCGaataaacaaatagaaggaTACTTACCTTCATTTCGGGACCCAGAGAAACAAGTATTTGGTTGTGAACACTATAAGAGAAATTGCAAAATTCGAGCTGCTTGTTGTGGGAAGTTATTTACATGCAGATTTTGTCATGACAACAATTCAAGTGACCACTCAATGGATAGAAAAGCAACATTGGAAATGATGTGTATGGCCTGCATGACTATACAGCCAGTTGGGCCCATATGCACGACGCCTTCATGTAATGGACTTTCAATGGCAAAGTACTACTGTAACATTTGCAAATTTTTTGACGATGAAAGGTAA 3222 0.3991 MATPLIPQQLLDGGGGVAVLSNLVPSSSSSSSSSNGGGGFNRSSLSESPILIFSFFQKAIRNELDALHRLALAFATGNRSDIQPLSERYHFLRSMYKHHSNAEDEVIFPALDKRVKNVAQTYSLEHKGESNLFDHLFELLNSPDDNDESFRRELASCTGALQTSVSQHMAKEQQQVFPLLIEKFSLEEQASLVWQFLCSIPVNMMAEFLPWLSTSISPDESQDLRMCLSKIVPEEKLLQKVIFTWMDGRSSANTVENCVDNSQVQCSPSPLAHQIGKINCACESTVSGKRKYSASILDAPETMGSHPIDEILLWHNAIKKELNEIAVETRKIQHSGDYTNLSAFNERLQFIAEVFIFHSIAEDKVIFPAVDGDFSFFQEHAEEESQFNDFRSLIERILSEEATSSSEVELYSNLCSHADHIMETIQRHFHNEEVQVLPLARKHFSFKRQRELVYQSLCMMPLKLIERVLPWFVGSLTEVEAEIFLKNIQSAAPAIDSALVTLFSGWACKARKNGQCLSSSESGFCPAKKIVRSSCTCPSALSGKDCPILAESDGTQRSAKRNMLELHKNGDVSKTSENECTQKPCCGARSCCVPALGVNSNNLGLSSLSAAKSLRSFTSSAPSLNSSLFIWETDSSSCDVGSAERPIDTIFKFHKAIRIDLEYLDVESGKLCDGDETTIRQFTGRFRLLWGLYRAHSNAEDDIVFPALESKETLHNVSHSYTLDHKAEEKLFEDISCVLSELSVLHEAMQRTHMSEDLSKSDLGISDANDSDDIRKYNELATKLQGMCKSIRVTLDQHIFREELELWPLFGKHFTVEEQDKIVGRIIGTTGAEVLQSMLPWVTSALTQDEQNKMMDTWKQATKNTMFNEWLTECLIESPGSTSQTETSERSTSQRGAEYQESLNLNDQMFKPGWKDIFRMNENEIVSEIRKVYRDSTLDPRRKAYLVQNLMTSRWIAAQQKLPKSQSGESSNKQIEGYLPSFRDPEKQVFGCEHYKRNCKIRAACCGKLFTCRFCHDNNSSDHSMDRKATLEMMCMACMTIQPVGPICTTPSCNGLSMAKYYCNICKFFDDER 1073
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03158 1073 CDD Hr-like 309 438 - -
Tsu03g03158 1073 Gene3D nmb1532 protein domain like 48 198 - -
Tsu03g03158 1073 Gene3D nmb1532 protein domain like 309 457 - -
Tsu03g03158 1073 ProSiteProfiles Zinc finger CHY-type profile. 985 1055 IPR008913 GO:0008270
Tsu03g03158 1073 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 30 1073 - -
Tsu03g03158 1073 MobiDBLite consensus disorder prediction 878 898 - -
Tsu03g03158 1073 SUPERFAMILY ARM repeat 129 474 IPR016024 -
Tsu03g03158 1073 Gene3D nmb1532 protein domain like 642 879 - -
Tsu03g03158 1073 ProSiteProfiles Zinc finger CTCHY-type profile. 1058 1073 IPR017921 -
Tsu03g03158 1073 SUPERFAMILY CHY zinc finger-like 984 1049 IPR037274 GO:0008270
Tsu03g03158 1073 CDD Hr-like 648 808 - -
Tsu03g03158 1073 Pfam Hemerythrin HHE cation binding domain 58 180 IPR012312 -
Tsu03g03158 1073 Pfam Hemerythrin HHE cation binding domain 306 440 IPR012312 -
Tsu03g03158 1073 Pfam Hemerythrin HHE cation binding domain 646 809 IPR012312 -
Tsu03g03158 1073 Pfam CHY zinc finger 992 1068 IPR008913 GO:0008270
Tsu03g03158 1073 CDD Hr-like 52 178 - -
Tsu03g03158 1073 PANTHER CHY ZINC FINGER PROTEIN 30 1073 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03158 Tsu-Chr3 43622035 43628868 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03158 1 1073 C2H2 Transcription Factor Family AT3G18290 65.118 0.0 1383
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03158 K16276 - gmx:100791354 1793.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03158 03 43622035 43628868 Tsu03g03158 03 43622035 43628868 ECH