Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03152 ATGGCTACTAAAAGGTTTTTAGATGATTCTGATCAAGATCCAGATAATAATCCAAACGACAAAAGAATGAGACCTACTAGACCTTCTTTAGCTTATGTAATTGGAAAAGcaattgaagttcaaaacatgaAGAATCTTTTAGCTGCCTTGGAACCTTTGTTTAAAAGAGTGGTGAGTGAAGAAGTGGATAAAGCAATGAGAAAGTGTTTTCCATGTTCCATCAATAGGTCACCTTCCTTAAGAATCCAAGCCCCAGTGGATCAATCACCAACCTTACAACTCTCATTCGACAAAAGACTTTCCCTCCCTATTTTCACAGGTAGTAGAATACTTGACAATGAAGGTAACCCCATCAACATAACTCTTgttgaaaaaacaaacaataaccAAATTGTTCCAACAAGTCTTCCTTACCCTATAAAGCTAGAGATTGTTGTTCTTGATGGGGATTTTCCACTTGATGAAAACGAGAATTGGACTAATGAGGAATTCAATAATTACATAGTGAAGGAAAGAGCTGGGAAGAGACCATTACTTGGTGGAGAAATGAACATTACTATGAGAGATGGAATTGCACCAATTGGGGACATAGAATTCACTGATAATTCTAGCTGGATAAAGTGTAGGAAGTTTAGAGTTGCAGTTAAAGTGAGTCATCATGGGAATAATCAAAGTGTTAGGATTCAAGAAGGAATGACTGAGGCATTTGTTGTTAAGGATCATCGTGGAGAATTGTACAAAAAGCACCACCCACCAAAGCTTGAAGATGATGTGTGGCGACTAGAGAAAATTGGAAAAGATGGagcttttcataaaaaaatgacTGACAAAGGGATAAAAACAGTGCAAGATTTCCTCAAATTAGCAGTTATGGATACACAAAAGCTAAGAGAGATTTTGGGCGTTGGAATGTCAGATAAAATGTGGGATGTAACAATAAAACATGCAATGACTTGTGAAATGGGGAGCAAGATCTATATATTCCGTGGACCtcaatttgttattgttttgaatccaatttgcaaattaattaaagctAATATCAATGGACAAGAATTTTCCAATAGAGATATGAGACAAATCAGTAAGAGCTATATAGACATGTTGGTGAGAGAAGCATACACAAAATGGCATGAGTTGGAGGAAATTGATAGAGTTTTAAATGATAACATTACTTTGTTAACCCAAGGTGATCAAACTATGGAACATTATCCAAACAATCATCCAGCAACAGTGGTAACACCATATCCTCAAAATGGTTACTATGGTGACAAATCTACAGAGAATATTGGTAGCTATGTACCAATCAATAATGCACAAATGGGAGGATCTGAGTGGTCAATATTGAATCAAGGCTATACCACAACAACATTTCCAAATGGATATCCCTTTGGCTTCTCAGGTACACAATCAGATGGAGACATAACACCTTCAAGTTCAGGCTCTAGGGACATCAATGGTGCCACAAGGCAACTTtag 1479 0.3482 MATKRFLDDSDQDPDNNPNDKRMRPTRPSLAYVIGKAIEVQNMKNLLAALEPLFKRVVSEEVDKAMRKCFPCSINRSPSLRIQAPVDQSPTLQLSFDKRLSLPIFTGSRILDNEGNPINITLVEKTNNNQIVPTSLPYPIKLEIVVLDGDFPLDENENWTNEEFNNYIVKERAGKRPLLGGEMNITMRDGIAPIGDIEFTDNSSWIKCRKFRVAVKVSHHGNNQSVRIQEGMTEAFVVKDHRGELYKKHHPPKLEDDVWRLEKIGKDGAFHKKMTDKGIKTVQDFLKLAVMDTQKLREILGVGMSDKMWDVTIKHAMTCEMGSKIYIFRGPQFVIVLNPICKLIKANINGQEFSNRDMRQISKSYIDMLVREAYTKWHELEEIDRVLNDNITLLTQGDQTMEHYPNNHPATVVTPYPQNGYYGDKSTENIGSYVPINNAQMGGSEWSILNQGYTTTTFPNGYPFGFSGTQSDGDITPSSSGSRDINGATRQL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03152 492 Pfam Calmodulin binding protein-like N-terminal domain 92 241 IPR046831 -
Tsu03g03152 492 PANTHER PROTEIN, PUTATIVE-RELATED 1 483 - -
Tsu03g03152 492 Pfam Calmodulin binding protein central domain 254 319 IPR046830 -
Tsu03g03152 492 PANTHER OS02G0177800 PROTEIN 1 483 IPR012416 GO:0005516
Tsu03g03152 492 Pfam Calmodulin binding protein C-terminal domain 324 383 IPR046829 -
Tsu03g03152 492 MobiDBLite consensus disorder prediction 465 492 - -
Tsu03g03152 492 MobiDBLite consensus disorder prediction 1 27 - -
Tsu03g03152 492 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03152 Tsu-Chr3 43543368 43548891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03152 3 384 Calmodulin-binding Proteins AT5G57580 46.392 5.80e-112 343
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03152 - - gmx:100803213 641.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03152 03 43543368 43548891 Tsu03g03152 03 43543368 43548891 ECH
Tsu02g00152 02 1136345 1139228 Tsu03g03152 03 43543368 43548891 PCT