Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03148 ATGATACTCAAAAGAACAGACCTTGCCCAAAATCTCTGTGATCCTCAATTTAATGATACTTATTTCAATCCAACTTTGTTTCAATATACACAAATTCTCAAAAACATCACCATATACTATAATTGTAATTCCACAGTCTCTGAGTATATACTTGACAATTCTCTATGTGGATCTCTCGATCCTTCTTTCTGTTATACCGGCGAAGGCGATGATCAAGATGGATTGTTAAGGAATTGCAAGAAACACATTCAAGTGCCAGTAGGAAGCAATTTTCCTATAAATGAAGATTATTATGGTTATTTTAAGCGTGATGTTCTTGAAAGTGGTTTGAATGAAGGGTTTGAGGTGGAGTATAGTGTGAATAAGGAATGTTTAAGGTGTTTGGGAGATACTGAATTAATAGATTGTAGATGGAAGAACAATAGTGATATTGAGAAACTTGCAGAGTCCTCTTGCTATTATGATAATTGTCCAGCTGGATCCAATGTTTTTTCCACAAACTGTCATCCTCTTCACAAAATTAGTAAGCCATTAAGCTGGCAAAGGAAAATGCAAGCTATTGCAGGAAGTGCAAGTGCAACATTTTTTGGATTATCCATATGTATCATTATCATTTATTTCATATACAAGTACATAAAGAATAACCAAGACATCACAAGTCAAACCCAAAAGAATAACCAAGACATTGAAGCATTCTTAAAAACTCATGAAGGATTTACCATAAGAAGATACaaattctcagatatcaagAAAATGACTAACAACTTTGAAGTTAAACTAGGACAAGGTGGCTATGGTGTTGTATATAAAGGAAAACTACTCAATGATCGTCTTGTGGCCGTGAAGATATTGAATGCATCCAAAGGTAATGGTGAAGAATTTATGAACGAAGTTTCTAGCATTACTAAAACCTCTCACATTAATGTCGTTGCACTTCTTGGATTTTGTTTCGATGGTCGCAAAAAAGTTCTTATCTACGAATTAATGTCAAATGGTTCGCTTGACAAGTTTATTTACAACAATCAATCTGAAGCCATTCAATCTCTGAGTTGGGAGATTCTTTATCAAATTGCTAAAGGGATAGCTCGTGGCTTAGAGTACTTGCATAGGGGATGTAGTACACGAATTTTACATTTTGACATCAAACCACATAACATTCTTTTAGATGAGAATTTTTGTCCAAAGATATCGGATTTTGGGCTAGCAAGACTTTGCCCCAAGAAAGAGAGCATTATTTCGATGTCAAATGCTAGAGGAACAATGGGATACGTAGCTCCTGAGTTGTGGAATAGAAATTTTGGAGGTGTTTCGCATAAGTCTGATGTTTATAGCTATGGAATGATGTTGTTAGAAATGGTTGGAGGAAGGAAAAACATTGTCGCTGATGCAAGTCATACAAGTGAGTTATACTTTCCTCATTGGGTATACAAAAGGCTTGATCTAGGCACCGATTTGATCATGGGCGAAATGATTGCCACAGAGGATGAAATCGCAAAGAGAATGACCATCGTGGGCTTATGGTGCATTCAAACATTTCCAAATGATAGACCTACAATGAGTAGAGTGATTGAAATGTTAGAAGGCAACATGAATTCATTGGAAATACCACCAAAACCTCTCCTTTCTTCTCCTACTAGATCACTACCAGAATCTTTAGTTTCATAA 1665 0.3544 MILKRTDLAQNLCDPQFNDTYFNPTLFQYTQILKNITIYYNCNSTVSEYILDNSLCGSLDPSFCYTGEGDDQDGLLRNCKKHIQVPVGSNFPINEDYYGYFKRDVLESGLNEGFEVEYSVNKECLRCLGDTELIDCRWKNNSDIEKLAESSCYYDNCPAGSNVFSTNCHPLHKISKPLSWQRKMQAIAGSASATFFGLSICIIIIYFIYKYIKNNQDITSQTQKNNQDIEAFLKTHEGFTIRRYKFSDIKKMTNNFEVKLGQGGYGVVYKGKLLNDRLVAVKILNASKGNGEEFMNEVSSITKTSHINVVALLGFCFDGRKKVLIYELMSNGSLDKFIYNNQSEAIQSLSWEILYQIAKGIARGLEYLHRGCSTRILHFDIKPHNILLDENFCPKISDFGLARLCPKKESIISMSNARGTMGYVAPELWNRNFGGVSHKSDVYSYGMMLLEMVGGRKNIVADASHTSELYFPHWVYKRLDLGTDLIMGEMIATEDEIAKRMTIVGLWCIQTFPNDRPTMSRVIEMLEGNMNSLEIPPKPLLSSPTRSLPESLVS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03148 554 Gene3D Transferase(Phosphotransferase) domain 1 329 535 - -
Tsu03g03148 554 Pfam Protein tyrosine and serine/threonine kinase 257 526 IPR001245 GO:0004672|GO:0006468
Tsu03g03148 554 ProSitePatterns Serine/Threonine protein kinases active-site signature. 376 388 IPR008271 GO:0004672|GO:0006468
Tsu03g03148 554 ProSitePatterns Protein kinases ATP-binding region signature. 260 282 IPR017441 GO:0005524
Tsu03g03148 554 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 182 554 - -
Tsu03g03148 554 ProSiteProfiles Protein kinase domain profile. 254 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03148 554 PANTHER RUST RESISTANCE KINASE LR10-RELATED 182 554 IPR045874 GO:0004672
Tsu03g03148 554 Gene3D Phosphorylase Kinase; domain 1 213 328 - -
Tsu03g03148 554 SUPERFAMILY Protein kinase-like (PK-like) 237 527 IPR011009 -
Tsu03g03148 554 SMART serkin_6 254 526 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03148 Tsu-Chr3 43530454 43533663 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03148 1 551 Receptor kinase-like Gene Family AT1G66910 39.182 2.15e-129 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu03g03148 PK_Tyr_Ser-Thr 3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03148 - - gmx:106794113 577.4