Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03143 atgatttttgaaaaatttgtagGGTATCTACAATCTCATCTAAGCTTGTTTCTTAAATGTATTAGATGCTGGAGAAAACAACTGATGGTAGCAAAGGATGCTAGACGTGTGGACATACTATGTTATCGTGTCTCCTTAAGCCAAAAACTTTTACAAGGGACTGAAGTGTATGGAGAACTTTATGAAATTGTTGATCAAGCAGTGAAGAAACTTGAACCAGAGGTGGGTCCACTGACTGGCTCACCACTGAAGATTGGTAGGGGGATTGTGAACAGGCTTTCTTCAGGGCCCGAGGTTCAAAAACTTTGTGGTGTTGCTCTTGAATCACTTGATTCAATGCTTTCTAAAAGGATCTTGCCTCCGACACCCAATCCAACTATTCAAGATGCAAGTTTACTAGCGCGAAATATGGTGAGGTTTGAAGATGTCACTGCAACATCACTCACTGTTATTTTGTGTTTGGAAGACCCTTCTGGAGAAAATAATGCTGGTTACGCTGTGTGGCATCGCAAAGCTGATGATGTGAACTATCCATTGGACCCAACTTGCACGAATCTCCTTCCAAATAGAAGACTCGACATCAGGGATTTACTTCCAGCTACAGAATACAGTTTCAAAGTTGTTTCTAATGATTTGAGGAAGTCGGGTATGTGCGAAGTTCAAGTAACAACAGAGCATGGTGAGGATGAAGTCCCAAATTGTTCAGCAACGGAAAGAAGTCAGAGCCCATTAACCAACTGTAGCAGTCTTTCCAATCCATCATCAATGGAAGATGAAACTAATCATAGCGACCAAACTGATAATCGATCAGATGATTATCCTATTTATCACAAGGATAGCAACCAGCTTGCTTCTGTAAATCTATCTAATGATGCTATTAACTGTTCCAATTTGGGCGGAGTGGGATGTCCCACTGATGCAGATTCCTTGTCAGACAAGCAGGTTGCTGTAGGAATGACTGATACTATACCTACTTCTGATGCATTAAAGCTTGAAAACAAGCATTCGGCAGAGGAACAAGTAACCAAGGACACGAGCACCGATGACGGGTCAGTTCCAACGAGAAGGGAATGTGTTCCGTTAACAGGTAGCTCAAAAAGGGGATTGCCTAATACTCCCAGCAGGTTGGAATTACTTAAAGATCGTCTGGGAAGAAAAGGTAGATCCAAAGTCAGTGGCAAAGATGTAGAAAATGGATCTGGGAAAAGGAGTGGCCCTCGAGATGGAAGCAAATCCAAGAAGAGAAGTGGTGAAAGGCAAGATGAGGGCTGCGAGGGCAATGATTTTCCAGATCGGGATTTTGAGTATTATGTGAAGGTGATTAGATGGTTAGAGTGTGAAGGACACATTGAAAAGGACTTCAGACAGAAATTTCTGACTTGGTACAGCTTAAGAGCAACCCCTGAAGAAATAAGGGTTGTGAAAATATATGTAGATACATTTCGTGAAGATCCGGTTTCTCTTGCCGAGCAACTTGTGGACACCTTCTCAGATTGTGTATCAAACAAGAGATCATCAGTTCCTGCAGGGTTCTGCATGAAGCTTTGGCATTGA 1554 0.4189 MIFEKFVGYLQSHLSLFLKCIRCWRKQLMVAKDARRVDILCYRVSLSQKLLQGTEVYGELYEIVDQAVKKLEPEVGPLTGSPLKIGRGIVNRLSSGPEVQKLCGVALESLDSMLSKRILPPTPNPTIQDASLLARNMVRFEDVTATSLTVILCLEDPSGENNAGYAVWHRKADDVNYPLDPTCTNLLPNRRLDIRDLLPATEYSFKVVSNDLRKSGMCEVQVTTEHGEDEVPNCSATERSQSPLTNCSSLSNPSSMEDETNHSDQTDNRSDDYPIYHKDSNQLASVNLSNDAINCSNLGGVGCPTDADSLSDKQVAVGMTDTIPTSDALKLENKHSAEEQVTKDTSTDDGSVPTRRECVPLTGSSKRGLPNTPSRLELLKDRLGRKGRSKVSGKDVENGSGKRSGPRDGSKSKKRSGERQDEGCEGNDFPDRDFEYYVKVIRWLECEGHIEKDFRQKFLTWYSLRATPEEIRVVKIYVDTFREDPVSLAEQLVDTFSDCVSNKRSSVPAGFCMKLWH 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03143 517 MobiDBLite consensus disorder prediction 378 426 - -
Tsu03g03143 517 MobiDBLite consensus disorder prediction 224 276 - -
Tsu03g03143 517 PANTHER VIN3-LIKE PROTEIN 2-RELATED 21 517 - -
Tsu03g03143 517 MobiDBLite consensus disorder prediction 260 276 - -
Tsu03g03143 517 MobiDBLite consensus disorder prediction 331 351 - -
Tsu03g03143 517 MobiDBLite consensus disorder prediction 228 259 - -
Tsu03g03143 517 MobiDBLite consensus disorder prediction 327 426 - -
Tsu03g03143 517 SUPERFAMILY Fibronectin type III 138 229 IPR036116 GO:0005515
Tsu03g03143 517 PANTHER VIN3-LIKE PROTEIN 2-RELATED 21 517 IPR044514 GO:0010048|GO:0040029
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03143 Tsu-Chr3 43481145 43483349 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03143 21 405 PHD Gene Family AT4G30200 40.394 1.87e-70 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03143 - - gmx:100794721 791.956