Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03142 ATGTCCAATGGTTCACttgacaaatttattttcaacaaGGGACCTGAAACCATTGCAACTTTGAGTTCGGATAATTTGTATCAAATTGCTATAGGGATAGCTCGTGGACTAGAATACTTGCATAGAGGATGTATCACTCGAATTTTACATTTTGACATAAAACCACATAACATTCTTTTAGATGAGACTTTTTGTCCGAAGATTTCTAATTTTGGCCTAGCAAAGCTTTGTCTCGGGAAAGAGAGTATTATTTCGATGTCAAATCAAAAAGGAACAATGGGGTATGTAGCTCCAAAAGTGTGGAATAGACATTTTGGAGGAGTTTTACACAAGTCTGATGTTTATAGTTATGGAATGATGTTATTGGAAATGGTTGGAGGGAGGAAAAACGTTAATGCTGATGCAAGCCACACAAGTGAGATATACTTTCCCCATTGGGTATACAGTAGGCTTGAACTTGGTAGTGATTTGAGACCTGATGGGATAATGGATATAGAAGAGGACGAGATTGCAAGAAGAATGACAATTGTGGGTTTGTGGTGTATTCAAACATTTCCATGTGATAGGCCTACAATGAGTAAAGTAATTGAAATGTTAGAAGTTAGCATGAATTTATTGGAAATACCACCAAAACCATTACTTTCGTCTCCTACGAGATCGGTATTAGAGTCTTCCACGACTTAA 684 0.3626 MSNGSLDKFIFNKGPETIATLSSDNLYQIAIGIARGLEYLHRGCITRILHFDIKPHNILLDETFCPKISNFGLAKLCLGKESIISMSNQKGTMGYVAPKVWNRHFGGVLHKSDVYSYGMMLLEMVGGRKNVNADASHTSEIYFPHWVYSRLELGSDLRPDGIMDIEEDEIARRMTIVGLWCIQTFPCDRPTMSKVIEMLEVSMNLLEIPPKPLLSSPTRSVLESSTT 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03142 227 SMART serkin_6 1 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03142 227 ProSiteProfiles Protein kinase domain profile. 1 206 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03142 227 ProSitePatterns Serine/Threonine protein kinases active-site signature. 48 60 IPR008271 GO:0004672|GO:0006468
Tsu03g03142 227 PIRSF ILK 1 207 - -
Tsu03g03142 227 Pfam Protein kinase domain 3 196 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03142 227 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 226 - -
Tsu03g03142 227 Gene3D Transferase(Phosphotransferase) domain 1 1 212 - -
Tsu03g03142 227 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 226 IPR045874 GO:0004672
Tsu03g03142 227 SUPERFAMILY Protein kinase-like (PK-like) 1 202 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03142 Tsu-Chr3 43447221 43447904 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03142 1 225 Receptor kinase-like Gene Family AT1G66980 55.411 4.61e-81 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu03g03142 Pkinase 4.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03142 - - gmx:100800335 377.481