Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03126 ATGGATAATCACATCCCTATGTTCACAAATATTAGATAcatctctctcttcttcttcttctcaataATCATCACTTTTTCCTCTAAGAAATCCCACTCTCAACCACTACCACCACAACCTCAACTTCCATCAATTAAAGATTATTCAATTTGTAAAGACATAAAAAACTCCTACAATTGTGGAAATATCACCAACATCTCTTATCCATTCTGGGGACAAAATCGTCCTTTTCTATGTGGCGCCGGCTATCCTTTTCAACTTAACTGCCACAACAACAATACTACTACCATTCTAATATCTTCAAAAAATTTCACAGTACATGAAATCGACACAAAAGAACACACCATCAAActcgaaaaaaaaaacctttatcAAGATCTTTGTTCTCCTGAATTTGATGTCACTTTTTTGACTCCATCAATGTTTCACTTTCACTATCTCCCAACTCTCAAGAACATCACCATATACTATGATTGTTCCTCTCGGTATTCATATATTTCTCCGTGTGAATCTCAGAGTAAGCATCCTTCTTTCTTTTATCTTGGCAATGAAATAAATGAAGTGTTAAGGAGTTGCAAGGGACATATTCAAGTACCAGTAGGAACAGAGTTTCCTCTGGAGAAAAATAATTCTGGTTATTATGAACGTGATGTTCTTGAAAGTGGTTGGAATAAGGGATTTAAAGTGGAGTATATTGTGGAGGATGATGAATGTTTGAAGTGTCTGGGAAGTGATGAAGGAGATTGCGAATGGAAGAACAATAGTGATTTTGAGAAACATGTTAAGTCTTGCTCTTATGATTATTGTCCAGATGGATCTATTGCTTATATATCACACTGTCCTCATCACAAACGCTTATCGACGTGGAAGAAGATTCTCGTTATTGGTCTTGCTTCTGTGTTTGGAGTACTTGCAGTGATCCTTGCCATATATTTCTATAGGCGCAAAAAGAATATAGGTTATGCAAAGTCACATGTACAGCCTCGCAGCATCTCTACTGATCCATCCTCAAAGGATCTTGAGAGAGGAAGTCAATACTTTGGAGGAAGTCAAAACTTTGGAGTGCAACATTTCACTTATAGTGAGCTTGAAGAAGCCACAAACTACTTTGATCCAACCAAAGAACTAGGAGAAGGGGGCTTTGGAACAGTGTATTTTGGAAAACTGTATGACGGGCGTAGTGTTGCAGTGAAGAGATTATACGAGAACAATTACAAAAGAGTTGAGCAATTCATGAATGAAGTTAAACTCTTGGCAGGATTAGTCCATCCAAATCTTGTGTCTCTATATGGATGCACTTCACGCCACAGCCGCGAACTTCTACTTGTCTACGAATACGTTTCAAATGGAACTGTCGCTGATCATCTCCatggtaaacaaaaaaaacatgcaAAGCTTACTTGGCCTATTAGAATGAATATTGCCGTGGAGACAGCAAGTGCGTTGAAGTATCTTCATATTTCTGACATCATTCACCGAGATATAAAAACCAATAATATTCTTCTCGACGCTCACTTCCGTgtcaaagtagcagattttggaCTCTCACGTCTTTTTCCATATGATCAAACGCATGTTTCAACCGCTCCACAAGGGACTCCAGGTTATGTAGATCCTGATTACCATCAATGCTATCAACTTACCGATAAAAGTGATGTCTATAGCTTTGGAGTCGTAATGATCGAGTTGATATCATCTTTACCGGCTGTTGATATAACAAGACATAGACATGAAATCAATTTAGCCAACATGGCTATCAACAGAATTCAAAACCAATCATTGCATGAAATTGTCGATCCTACCCTCGGTTATGAATCAGATCCTAAGGTaaagaaaatgataaatgctaTTGGTGAATTAGCATTTCAATGTTTGTCAAGTTCCAAAGATATGAGACCTTGCATGGATGATGTGTTAGAAACATTATTGGATATTCAAAGTGATGGTAAACATAAAAGTAAACCTGAGGTATTGGACATTTCAAGCTTAGCAGATGATGTTGTTTTGTTGAATCATGATCCACCACCACTATCACCTGATTCAAATCTTGGAAGCAATTATACAACACCAAATACTAGTGGTTAA 2085 0.3568 MDNHIPMFTNIRYISLFFFFSIIITFSSKKSHSQPLPPQPQLPSIKDYSICKDIKNSYNCGNITNISYPFWGQNRPFLCGAGYPFQLNCHNNNTTTILISSKNFTVHEIDTKEHTIKLEKKNLYQDLCSPEFDVTFLTPSMFHFHYLPTLKNITIYYDCSSRYSYISPCESQSKHPSFFYLGNEINEVLRSCKGHIQVPVGTEFPLEKNNSGYYERDVLESGWNKGFKVEYIVEDDECLKCLGSDEGDCEWKNNSDFEKHVKSCSYDYCPDGSIAYISHCPHHKRLSTWKKILVIGLASVFGVLAVILAIYFYRRKKNIGYAKSHVQPRSISTDPSSKDLERGSQYFGGSQNFGVQHFTYSELEEATNYFDPTKELGEGGFGTVYFGKLYDGRSVAVKRLYENNYKRVEQFMNEVKLLAGLVHPNLVSLYGCTSRHSRELLLVYEYVSNGTVADHLHGKQKKHAKLTWPIRMNIAVETASALKYLHISDIIHRDIKTNNILLDAHFRVKVADFGLSRLFPYDQTHVSTAPQGTPGYVDPDYHQCYQLTDKSDVYSFGVVMIELISSLPAVDITRHRHEINLANMAINRIQNQSLHEIVDPTLGYESDPKVKKMINAIGELAFQCLSSSKDMRPCMDDVLETLLDIQSDGKHKSKPEVLDISSLADDVVLLNHDPPPLSPDSNLGSNYTTPNTSG 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03126 694 MobiDBLite consensus disorder prediction 671 694 - -
Tsu03g03126 694 ProSitePatterns Serine/Threonine protein kinases active-site signature. 490 502 IPR008271 GO:0004672|GO:0006468
Tsu03g03126 694 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 19 683 IPR044652 -
Tsu03g03126 694 Pfam Wall-associated receptor kinase C-terminal 183 256 IPR032872 -
Tsu03g03126 694 SMART serkin_6 370 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03126 694 Gene3D Phosphorylase Kinase; domain 1 348 446 - -
Tsu03g03126 694 Gene3D Transferase(Phosphotransferase) domain 1 447 657 - -
Tsu03g03126 694 ProSitePatterns Protein kinases ATP-binding region signature. 376 398 IPR017441 GO:0005524
Tsu03g03126 694 ProSiteProfiles Protein kinase domain profile. 370 643 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03126 694 SUPERFAMILY Protein kinase-like (PK-like) 351 642 IPR011009 -
Tsu03g03126 694 Pfam Protein tyrosine and serine/threonine kinase 373 642 IPR001245 GO:0004672|GO:0006468
Tsu03g03126 694 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.2 19 683 - -
Tsu03g03126 694 Pfam Wall-associated receptor kinase galacturonan-binding 57 118 IPR025287 GO:0030247
Tsu03g03126 694 MobiDBLite consensus disorder prediction 678 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03126 Tsu-Chr3 43173619 43179715 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03126 51 694 Receptor kinase-like Gene Family AT1G25390 42.560 2.47e-138 418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tsu03g03126 PK_Tyr_Ser-Thr 1.2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03126 - - cam:101492618 756.518