Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03125 ATGCTTGAGAAGTCTATGAAAAACTACAATTTATCCGTGCTTTATAAGTCAATATTGACTTTCGCGCTTCTTCCTTATTCCTTCCTTTCTGGAAGACGGAACAAAACAACAGTAATTCCGTTCGGCTGcgaaAGGACATGCAATGACCCTATGAGGTTAGGGAAATGGGGTGGGATCCCTGTTTGTGTTGTTGCTTCACTAGCTCTTCTGAAACATTTCCAAAGCAGAAAAGGCTTTGCTACAACAATATATTATGGAAAACTTAAGAATGGTCGTGAGATTGCAGTTCAAAGCTTTAATGAAGACAATTGCACCATATGGAAACAGTTCATCAATGAAACTGTTATCCTAAACTACATGCCCCACAAAAACCTTGTTACAATTTATGGATGCGCAACTTATCAAAAGGAAATCTTGCTAGTACATGAATACATGTCCAATGGAACTCTTGCTGCTAATATTCAAGGCCAAATATCAGAAAACAGTATAACATTAACTTGGCCTAACAGATTGGATATTGCAATTGATATTGCAAATGCACTCGACTATCTTCACTATCATGGCATTGTCCACCGTAATGTAAAGTCTCACAATATTTTTCTTGATACAAACTTTTGTGCTAAACTTGCTAACTTGCATCAGTCAAAGAAACTTGATGTTGAAGCAACCCGTGTTACAAGAGACTTGATAGGAACAGGTGGTTATATAGATCCAGAACTTGTGGCAAAAGGCTTACTTGGTGTCAAAAATGATGTTTACAGCTTTGGTGTGGTGTTGTGTGAGCTTGTGTCATCCAAGCTTGCAAAATATTATATTCAGAATGAAGAAGAAACTCTAGGTTCACTTTTATGTACAAAAGTTGAAAACAAAGCTTTGGTGGAGCTGTTGGATCCAAAACTTGGCTTCCAATCAGACATTAAAATCAACAAGATGATGACTGCTACGGCTGAGCTTGCATTTTGGTGTTTGCAATGTCCACAAGAATTAAGGCCTGACATGGAACAAGTGCTAGAGGCTCTCAACGGCATAAAGCAAGGGAGATATGAGATAAACCCAATAAAAGCTTTCAAAATCTTCCACCATGCCGAACTTGAAAAAGCTACAAACCATTTCGACACTTTTCTGGGACAAGGAGGGTTCGGCAAAGTCTACTATGgaAAACTTAACGACGGTACAGAAGTTGCAATAAAACGTTTCCATGAAGAGACAGAAAAAACCGTCGGCCAATTCATGAAAGAAATTGATATCTTAAGTCACTTGCATCATCAAAATCTGGTTTTACTTTATGGTTGCAGTTCCCGCCATAGCAACAAGCATATGCTAGTGTATGAGTACATTGCTAATGGAACTCTTTCACAGCATCTTCATGGATCATCAAGTAGTAAACTATCATGGCTTACTAGATTGAATATTGCTATTGAAACTGCAAAGGCCTTGGTATATCTTCACGACTCAGGTATCATTCATCGGGACATAAAAGGAAGTAATATTCTGCTGGATGAAAATTTTACTGTCAAAGTTGCAGATTTTGGACTCTCGCGGTTTCTTCCAGACTATGTTACTCATGTTTCAACTCTTCCGGTAGGAACTCAAGCTTACATTGACCCAGACTACTTTGAAACCGGAAGGGTGAGTGAAAAAAGTGACGTCTATAGCTTCGGGGTGAtcttatttgagcttatatcATCCAAACCCGCAAGTTTAATGCAAGGCACTGAGCGTGTCACTCTTGCACAATTTGCAATGAGCAAAATCTTAAACAAAGAATTGGATTCGCTAGTGTGTCGGAgtctttcaatttcttttaatcCAAATGTAGTGGAAATGATAACGGCAGTGGCAGAGTTAGCATTTCAGTGTCTGCAGTGTCCCAAGGAACTTAGGCCAACCATGAAACAGCTGTCAAATCGTTTTGGAAAAGCAGATGTTAGAGCACTATTGTACCGTTATAACCACAGCTCTCTTAAGCACGTTACTGTCAATGACGTGTTTGGGGGGCTGTGTACCGTTATGACCTCGATAGAGACAAAAGCTAGGTCCAATGGAGATGCAACGGCCCAATGGGCCCATTGGCATTATGACCTCGCCTGCTTCAGCTGGAGAGATCGTGGGAGAGAAAACTCCCGCGGTTCCTCGCCGTCTCTTGCTTTGGTCTTCACGAATCTTCTTAGTCGTGTTTCTCGTTGTTGCTTGATTAAAAATTATCCTGCTTGGGAATTTCAATTTAGACATTATGTTAAATGGGAGGGATTATGGAGTCACTTGGATGATGTCTCTTTGGCACCATTAGAGACAACCGATTTCGGTGAATGGGAAACCAAAGATGCAAAAATTATCACTTGGATTCTCAGTACTATTGATCCTCAGATGATTAATAATTTGCGATGTTTTTCTACTGCACAAGAAATGTGGAACTACTTGAAGCGTATCTATGACCAAGATAACGATGCCAAACGTTTTCAGTTGGAGCAAGAGATAGCCAATTACAAACAAGGTAACCTGTCTGTTCAAGAGTTTTATTCTGGGTTTCTGAATTTGTGGACAGACCACTCTGCAATTATACATGCTAAGGTCCCCAAGAGTTCTCTTGCGGTTGTCCAAGAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTGCTGGTGAACTTCTACGAGAGGAACAATGTCTTGCCACTCAAGGAACCATGTCTCATGATGCTGTCATTTCTGAGCCTGTTACGGTTGCATATGCTGCTCAGAGTAGAGGTAAAGGTAGTGATGTTCGACAAATTCAATGCTTCTCGTGCAAACAATTTGGACATTATGCTCATAGTTGCGGTGGTAAGAAGTTTTGTAATTATTGCAAGAAGCAGGGACATATTATCTCTGGTTGCCTCATTCGTCCTCCACGACGAACACAACGTCCGGTGCAAGCTCTTCATGCCTCTACAAGCTCTGCAGTTGGTCCTTCCACATCTAATGGTGGTGCTTTACAGCCTGAAATAATCCAACAAATGGTACTTTCCGCTCTTTCAGCCTTGGGAATTCAGGGTAAGTCTTCTCATGTTTCTCCCCAATGGTTTCTTGATTCTGGTGCATCCAATCACATGACAGAATCTTCTGAATTCTTGCGCAATTTACATTCTTATCATGGAACAGGTGTCGGGGAAGGTGATCGCAAAGGGGCCTAA 3303 0.3842 MLEKSMKNYNLSVLYKSILTFALLPYSFLSGRRNKTTVIPFGCERTCNDPMRLGKWGGIPVCVVASLALLKHFQSRKGFATTIYYGKLKNGREIAVQSFNEDNCTIWKQFINETVILNYMPHKNLVTIYGCATYQKEILLVHEYMSNGTLAANIQGQISENSITLTWPNRLDIAIDIANALDYLHYHGIVHRNVKSHNIFLDTNFCAKLANLHQSKKLDVEATRVTRDLIGTGGYIDPELVAKGLLGVKNDVYSFGVVLCELVSSKLAKYYIQNEEETLGSLLCTKVENKALVELLDPKLGFQSDIKINKMMTATAELAFWCLQCPQELRPDMEQVLEALNGIKQGRYEINPIKAFKIFHHAELEKATNHFDTFLGQGGFGKVYYGKLNDGTEVAIKRFHEETEKTVGQFMKEIDILSHLHHQNLVLLYGCSSRHSNKHMLVYEYIANGTLSQHLHGSSSSKLSWLTRLNIAIETAKALVYLHDSGIIHRDIKGSNILLDENFTVKVADFGLSRFLPDYVTHVSTLPVGTQAYIDPDYFETGRVSEKSDVYSFGVILFELISSKPASLMQGTERVTLAQFAMSKILNKELDSLVCRSLSISFNPNVVEMITAVAELAFQCLQCPKELRPTMKQLSNRFGKADVRALLYRYNHSSLKHVTVNDVFGGLCTVMTSIETKARSNGDATAQWAHWHYDLACFSWRDRGRENSRGSSPSLALVFTNLLSRVSRCCLIKNYPAWEFQFRHYVKWEGLWSHLDDVSLAPLETTDFGEWETKDAKIITWILSTIDPQMINNLRCFSTAQEMWNYLKRIYDQDNDAKRFQLEQEIANYKQGNLSVQEFYSGFLNLWTDHSAIIHAKVPKSSLAVVQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGELLREEQCLATQGTMSHDAVISEPVTVAYAAQSRGKGSDVRQIQCFSCKQFGHYAHSCGGKKFCNYCKKQGHIISGCLIRPPRRTQRPVQALHASTSSAVGPSTSNGGALQPEIIQQMVLSALSALGIQGKSSHVSPQWFLDSGASNHMTESSEFLRNLHSYHGTGVGEGDRKGA 1100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03125 1100 ProSitePatterns Serine/Threonine protein kinases active-site signature. 487 499 IPR008271 GO:0004672|GO:0006468
Tsu03g03125 1100 Pfam gag-polypeptide of LTR copia-type 771 849 - -
Tsu03g03125 1100 Gene3D Phosphorylase Kinase; domain 1 76 145 - -
Tsu03g03125 1100 PANTHER TYROSINE KINASE FAMILY PROTEIN 71 635 - -
Tsu03g03125 1100 ProSiteProfiles Protein kinase domain profile. 69 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03125 1100 Coils Coil 866 868 - -
Tsu03g03125 1100 Pfam Protein tyrosine and serine/threonine kinase 371 637 IPR001245 GO:0004672|GO:0006468
Tsu03g03125 1100 ProSiteProfiles Zinc finger CCHC-type profile. 970 983 IPR001878 GO:0003676|GO:0008270
Tsu03g03125 1100 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 71 635 IPR044652 -
Tsu03g03125 1100 Gene3D Transferase(Phosphotransferase) domain 1 446 651 - -
Tsu03g03125 1100 ProSiteProfiles Protein kinase domain profile. 369 655 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03125 1100 Gene3D - 953 1009 - -
Tsu03g03125 1100 SMART c2hcfinal6 969 985 IPR001878 GO:0003676|GO:0008270
Tsu03g03125 1100 SMART c2hcfinal6 988 1004 IPR001878 GO:0003676|GO:0008270
Tsu03g03125 1100 Pfam Protein kinase domain 82 338 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03125 1100 MobiDBLite consensus disorder prediction 1013 1034 - -
Tsu03g03125 1100 SUPERFAMILY Retrovirus zinc finger-like domains 959 1003 IPR036875 GO:0003676|GO:0008270
Tsu03g03125 1100 MobiDBLite consensus disorder prediction 1014 1034 - -
Tsu03g03125 1100 SUPERFAMILY Protein kinase-like (PK-like) 77 345 IPR011009 -
Tsu03g03125 1100 Gene3D Transferase(Phosphotransferase) domain 1 146 347 - -
Tsu03g03125 1100 ProSitePatterns Protein kinases ATP-binding region signature. 375 397 IPR017441 GO:0005524
Tsu03g03125 1100 SUPERFAMILY Protein kinase-like (PK-like) 352 638 IPR011009 -
Tsu03g03125 1100 SMART serkin_6 73 340 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03125 1100 SMART serkin_6 369 647 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03125 1100 Gene3D Phosphorylase Kinase; domain 1 348 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03125 Tsu-Chr3 43104661 43115870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03125 358 634 Receptor kinase-like Gene Family AT1G25390 55.124 2.08e-92 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tsu03g03125 PK_Tyr_Ser-Thr 7.2e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03125 - - gmx:102666805 805.053