Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03120 ATGGAGATTTTCAAATTCTTCTTCTACTTCATTAATCTTCTCTTTGCTTTCATcttaacatcatcatcatctttagCAATTGATCCTTATTCACAAGCACTCCTAAGTCTAAAATCTGAGCttatagatgatgataatagcTTACATGACTGGGTGGTGGCATCATCAAGTGGAAGTTCCTATCCATGTTGTTCTTGGTCTGGCATCAAGTGTAACAAGGACTCAATTGTAATTTCAATAGACCTTTCCATGAAGAAACTAGGAGGTATACTATCAGGTAACCAATTAAGTATCTTCACAAATGTTACTGATTTCAACATAAGTTATAATTTCTTCTCTGGTAAACTTCCACCAGAAATTTTCAACCTCACAAGCTTGAAAAGTTTGGATATAAACAGAAACAATTTCTCAGGTCAATTCCCAAAAGGAATTCCTAAACTCAAAAATTTAGTTGTACTTGATGCCTTTAGCAACAGCTTTTCAGGTCAATTACCTGCTGAATTTTCAGAATTGGAGTATCTTAAGATTCTCAACTTAGCTGGTAGTTACTTCAGTGGAACAATTCCATCTGAATATGGTTCTTTTAGAAGCCTTGAGTTTCTTCATTTAGCTGGAAATTCTTTATCCGGAACTATACCTCGAGAACTTGGTAACCTCAAAACATTGACACATATGGAGATTGGTTACAACTTATATCATGGTTTCATTCCACCTCAACTAGGTAATTTGAGCCAGCTTCATTATCTTGACATAGCAGGTGCAAATTTATCTGGAACAATTCCAAAGGAATTTTCCAACCTCACAAGTTTGCAATCACTTTTTCTGTTCAGAAACCAACTCACAGGATCGATACCGAGTGAGTTCAGCAATATTAAGCCTCTCACAAATTTAGATCTTTCTGATAATTTCCTTTCAGGGTCAATTCCTGAAAGCTTTTCAGAACTGAAAAGCTTAAGACTTCTTAGTCTTATGTACAATGACATGAGTGGAACTGTTCCTGATGGTATTGCAGAACTAAGATCCTTGGAAACTCTACTCATTTGGAATAATCACTTCTCTGGATTACTCCCAAAGAGTTTAGGTAAAAACTCGAAACTCAAGTGGGTGGATGTCTCCACAAACAAATTCAATGGCAGCATACCACCAGACATTTGTCGAGGTGGAGTTCTGTCGAAGCTAATCATGTTTTCAAACAGATTCACAGGTAGTCTTTTCTCGATCTCGAATTGTTCTTCCCTTGTTCGACTTCGCCTAGAAGATAATTCATTCTCAGGTGAAGTCACTTTAAAATTCAGCCATCTTCCTGATATCACATATGTTGATTTGTCATGTAACATATTTGTTGGTGGGATTCCTTTAGATATTTCTCAAGCTACTCAATTGGAGTATTTTAATGTCTCTTATAATAAGCAATTAGGAGGCATTATCCCTACATTAATATGGTCTTTGCCACAACTTCGAAATTTCTCAGCATCTTCTTGTGGTATCTTAGGCATTCTTCCTTCATTTGACTCATGCAAATCAATTTCTACAATTGATCTTGGTAGAAACAATTTATATGGAACAATCTCAAAAACTGTTTCGAAATGTCAAGCTCTTGTGACAATTGAATTGCCTTACAATAATATGACGGGTCAAATACCCGAGGAGCTTGCAAGTATCCCTATTCTTGAAATTGTAGATTTATCTAACAACAAGTTCAATGGCCACATACCGGAAAAGCTTGGTAGTTCATTAAGTTTACATCTTCTCAATGTGTCTTTCAACAATATCTCGGGTTCAATACCGAATTCAAAGACATTTAAATTAATGAATAACAGTGCATTTGTTGGAAACTCGGAGCTATGCGGAGCACCTCTAAGACCATGTTTTGAGAGAGTAGGAACTTGGAAGCTTACACATATTTTGTTACTCTCTGTAGGGTTGCTAATAATCTTTCTGGTATTGGCTTTTGGAATACTTCATTTCAGAAAGGGATttaaaagtcaatggaaaaTGGTTTCATTTGTCGGACTTCCTCAATTCACAGCAAATGATGTCTTGACAAGCTTCAGTGTTGTTGCCGCCGAACATACACATGTTCCATCACCATCATCAGTAGTTACAAAAGCAGTTCTTCCAACAGGTATAACAGTATTAGTCAAGAAGATTGAATGGGAAAATAGGAGCATTAATGGAGTGTCGGAATTTATAACGAGGCTAGGAAATGCAAGGCACAAGAATTTAAtcagattgttgggtttttgccACAACCAGCAACTAGTTTATCTTTTATATGATTACTTGCCAAATGGAAACTTGGCTGAGAAAATTGGAATGAAATGGGATTGGGCAGCTAAATTCAAAACAGTGGTTGGAATTGCAAGGGGACTGTGTTTTCTTCACCATGAATGTTACCCGGCTATACCACATGGAGACTTGAAATCTACCAACATTGTATTCGATGAAAATATGGAACCCCATTTGGCTGAATTTGGGTTTAAACAAGTCTTACAGTTGAGCCGCAATGGCGCATCTCCAACTAAAACTATGCAGGAAACAGAATACAATGAAGTAATGACAGAGGAACTCAGCAATGATGTGTACAATTTTGGGAAGATGATTCTAGAAATTTTAACTGGCAGAAAGTTGACGGCAAGTGCAGCAACCAACATTCACGGCAATTCACAGGAGGTTCTTCTAAGAGAAGTTTACAATGGTCACGAAACGACCTCTGTCGGTTCGACAATGCAAGAGATTAAACTGGTTTTTGAGGTTGCTATGCTTTGCACTAAAAGCAGATCATCCGATCGTCCATTCATGGAAGATGTTCTGAAGCTTCTGTCAGGCTTAAAATGTTTAGAAAATGATGAAAGTTCTAAATAA 2865 0.3609 MEIFKFFFYFINLLFAFILTSSSSLAIDPYSQALLSLKSELIDDDNSLHDWVVASSSGSSYPCCSWSGIKCNKDSIVISIDLSMKKLGGILSGNQLSIFTNVTDFNISYNFFSGKLPPEIFNLTSLKSLDINRNNFSGQFPKGIPKLKNLVVLDAFSNSFSGQLPAEFSELEYLKILNLAGSYFSGTIPSEYGSFRSLEFLHLAGNSLSGTIPRELGNLKTLTHMEIGYNLYHGFIPPQLGNLSQLHYLDIAGANLSGTIPKEFSNLTSLQSLFLFRNQLTGSIPSEFSNIKPLTNLDLSDNFLSGSIPESFSELKSLRLLSLMYNDMSGTVPDGIAELRSLETLLIWNNHFSGLLPKSLGKNSKLKWVDVSTNKFNGSIPPDICRGGVLSKLIMFSNRFTGSLFSISNCSSLVRLRLEDNSFSGEVTLKFSHLPDITYVDLSCNIFVGGIPLDISQATQLEYFNVSYNKQLGGIIPTLIWSLPQLRNFSASSCGILGILPSFDSCKSISTIDLGRNNLYGTISKTVSKCQALVTIELPYNNMTGQIPEELASIPILEIVDLSNNKFNGHIPEKLGSSLSLHLLNVSFNNISGSIPNSKTFKLMNNSAFVGNSELCGAPLRPCFERVGTWKLTHILLLSVGLLIIFLVLAFGILHFRKGFKSQWKMVSFVGLPQFTANDVLTSFSVVAAEHTHVPSPSSVVTKAVLPTGITVLVKKIEWENRSINGVSEFITRLGNARHKNLIRLLGFCHNQQLVYLLYDYLPNGNLAEKIGMKWDWAAKFKTVVGIARGLCFLHHECYPAIPHGDLKSTNIVFDENMEPHLAEFGFKQVLQLSRNGASPTKTMQETEYNEVMTEELSNDVYNFGKMILEILTGRKLTASAATNIHGNSQEVLLREVYNGHETTSVGSTMQEIKLVFEVAMLCTKSRSSDRPFMEDVLKLLSGLKCLENDESSK 954
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03120 954 SUPERFAMILY RNI-like 331 602 - -
Tsu03g03120 954 Gene3D Ribonuclease Inhibitor 183 294 IPR032675 -
Tsu03g03120 954 Gene3D Phosphorylase Kinase; domain 1 675 759 - -
Tsu03g03120 954 SMART serkin_6 675 941 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03120 954 PANTHER UNNAMED PRODUCT 7 946 - -
Tsu03g03120 954 Pfam Leucine Rich Repeat 294 315 IPR001611 GO:0005515
Tsu03g03120 954 Gene3D Ribonuclease Inhibitor 28 182 IPR032675 -
Tsu03g03120 954 ProSiteProfiles Protein kinase domain profile. 664 944 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03120 954 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672|GO:0006468
Tsu03g03120 954 SMART LRR_typ_2 339 362 IPR003591 -
Tsu03g03120 954 SMART LRR_typ_2 267 290 IPR003591 -
Tsu03g03120 954 SMART LRR_typ_2 195 219 IPR003591 -
Tsu03g03120 954 SMART LRR_typ_2 554 578 IPR003591 -
Tsu03g03120 954 SMART LRR_typ_2 123 147 IPR003591 -
Tsu03g03120 954 SUPERFAMILY Protein kinase-like (PK-like) 699 941 IPR011009 -
Tsu03g03120 954 Gene3D Ribonuclease Inhibitor 295 627 IPR032675 -
Tsu03g03120 954 Pfam Leucine rich repeat N-terminal domain 32 72 IPR013210 -
Tsu03g03120 954 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE 7 946 - -
Tsu03g03120 954 Pfam Protein tyrosine and serine/threonine kinase 708 940 IPR001245 GO:0004672|GO:0006468
Tsu03g03120 954 Gene3D Transferase(Phosphotransferase) domain 1 760 953 - -
Tsu03g03120 954 SUPERFAMILY RNI-like 79 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03120 Tsu-Chr3 43080923 43084399 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03120 8 942 Receptor kinase-like Gene Family AT5G51350 52.366 0.0 922
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu03g03120 PK_Tyr_Ser-Thr 1.1e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03120 - - aprc:113852384 1386.7