Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03117 ATGACGAACAACTTCAAAGTCGAATTAGGACAAGGTGGTTTTGGTGCTGTATACAAAGGAAAGCTACCCGATAATCGCCCTGTTGATGTAAAGATATTGAAGGCATCCAAAAGAAATGGTGAAGATTTTATGAATGAGGTTTCTAGCATTACTAAAACCTCTCATGTTAATGTCGTCACCTTTCTTGGATTTAGTTTTGAAGGCCGGAAAAAAGCTCTTATCTATGAATTAATGTCCAATGGTTCTCTTGACAAACTTATTTACAATAAAGGGCCTGGAACTGTTCCATCTTTGAGTTGGGAGATTCTTTATCAAATTTCTAAAGGGATAGCTCGAGGGCTGGAGTACCTGCATAGAGGATGTAGCACTCGAATTTTACATTTTGACATCAAACCACATAATATTCTCTTGGATGAGAATTTTTGTCCAAAGATATCAGATTTTGGGATGGCAAGACTTTGGCCAAAGAAAGAGAGTAATATTTTGATGTCAGGTCCTAGAGGGACAATGGGATATGTAGCTCCTGAGCTATGGAATAAAAATTTCGGACGAGTTTCACACAAGTCTGATGTTTATAGTTATGGAATGATGTTGTTGGAAATGGTCGGAGGGAGGAAAAACCTTCGTGCTGATGCAAGTCACACAAGTGAAATATACTTTCCTTATTGGGTGTACAGCAGGCTTGATCTAGGCGGTTATTTAAGACCGGGTGAAGTCATTGCCTCAGAAGAAGATGAGATCGCAAAGAGAATGACCGTCGTAGGTTTATGGTGCATTCAAACATTTCCAAATGATAGGCCTACAATGAGTAGAGTGATTGAAATGTTAGAATGCAACATGAATTCATTGGAAATACCACCAAAACCTGTTCTTTCTTCTCCTACTGGATCAGTACCAAAATCTCCAGCTTCATGA 915 0.3891 MTNNFKVELGQGGFGAVYKGKLPDNRPVDVKILKASKRNGEDFMNEVSSITKTSHVNVVTFLGFSFEGRKKALIYELMSNGSLDKLIYNKGPGTVPSLSWEILYQISKGIARGLEYLHRGCSTRILHFDIKPHNILLDENFCPKISDFGMARLWPKKESNILMSGPRGTMGYVAPELWNKNFGRVSHKSDVYSYGMMLLEMVGGRKNLRADASHTSEIYFPYWVYSRLDLGGYLRPGEVIASEEDEIAKRMTVVGLWCIQTFPNDRPTMSRVIEMLECNMNSLEIPPKPVLSSPTGSVPKSPAS 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03117 304 PANTHER MALECTIN/RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 302 - -
Tsu03g03117 304 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 302 IPR045874 GO:0004672
Tsu03g03117 304 PIRSF ILK 3 285 - -
Tsu03g03117 304 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Tsu03g03117 304 SMART serkin_6 3 276 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03117 304 Pfam Protein kinase domain 6 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03117 304 SUPERFAMILY Protein kinase-like (PK-like) 7 277 IPR011009 -
Tsu03g03117 304 Gene3D Transferase(Phosphotransferase) domain 1 78 285 - -
Tsu03g03117 304 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Tsu03g03117 304 ProSiteProfiles Protein kinase domain profile. 3 291 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03117 Tsu-Chr3 43063489 43064403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03117 1 301 Receptor kinase-like Gene Family AT5G38280 56.066 1.04e-115 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Tsu03g03117 Pkinase 1.2e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03117 - - gmx:102665158 481.1