Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03115 ATGccaaatttctcttttttatgtcaATGTTTTTCTCCTAATGGAACTACAAAGAAAAACAACCCTTCACTAACTAGGGATTTTGAGGGAAAGGATTTTGAGGGAAAGCAACTCGGCAATGATCAAAGTGTGTTTGTTGGCTCTAAGGTTACAAGCACATGTAATGAATCAGTTCCTGTGGATTTGATTTCTAAGTTACCAAATAGTCATGGTGGTCAATCGATGTTGATTGATTCCGAGGTGCAAAATAGCCAATGCAATATTAGTGAGAGTGAGATATTCAAGTATTCTGAACTTGAAGAAGCCACCGATAAATTTGACACTAGTAGAATACTTGGGAGTGGAGGCTATGGAACAGTTTACTCTGGAACACTTAAAGATGGTCGTCTTGTTGCAATAAAGCGCATGCACAAAGACAAGTTCAAGATCTTAAGGTTACATGATAAGAAGCTTGAAGAGGAGACACTAAGAAAGTTCATCAATGAAGTTTCAATGCTAACTCGCATGAGGCATGAAAATCTTGTCCAATTGTTCGGCTGCACCTCTCCTCAAACCCGTGAACTACTTCTTGTGCAAGAATATGTTCCCAATGGAACCTTGGCTCGTCGTCTTCGTAAAGACACCTTGCCTTGGTCAACTCGACTAAATGTTGCTGTACAAACTGCAAGTGCATTGGCTTATCTTCATGCTTCCAATGTTATCCACCGTGACGTGAAAACCAGTAATATTCTACTTGACGGAAGTTTGAATGCTAAAGTTGCAGACTTTGGATTGTCGCGCCTTGTCCCGCATGGTGCTACACACATCACAACCGATCCTGCGGGAACTCCCGGTTATATTGATCCGGAGTATTACGAACATTGTCATCTGTCGGATAAAAGTGATGTGTACAGCTTTGGAGTGATACTAGTCGAGTTGATTTCATCTTTGCCTGCATATAGCGAAGATGAAAAACAACCTTTTCTTTCGGATTTTGCTATGGATAAAATCTTTAATGGACAACTCGAAAAGCTTGTCGACCCAAATCTTAGATTTGAATCAGACAATTGGATAAGTGAAACAGTAAGTGCAGTGGCAGAGTTGGCATTTGGCTGTTTACAACCTCAAAGAAACATGAGACCTACCATGAGTGAAGTGTTGAACACTCTTGAGAACATAAAAAGTGGAAGCTCTCAAAAAGCACTTAAATGGGGTTCAAATCATTGTTATAATGCTACCAAAGTTCACATTGTGTCACGTTTGCCTGATGATTATTTTGAGAAGAAATAG 1269 0.3932 MPNFSFLCQCFSPNGTTKKNNPSLTRDFEGKDFEGKQLGNDQSVFVGSKVTSTCNESVPVDLISKLPNSHGGQSMLIDSEVQNSQCNISESEIFKYSELEEATDKFDTSRILGSGGYGTVYSGTLKDGRLVAIKRMHKDKFKILRLHDKKLEEETLRKFINEVSMLTRMRHENLVQLFGCTSPQTRELLLVQEYVPNGTLARRLRKDTLPWSTRLNVAVQTASALAYLHASNVIHRDVKTSNILLDGSLNAKVADFGLSRLVPHGATHITTDPAGTPGYIDPEYYEHCHLSDKSDVYSFGVILVELISSLPAYSEDEKQPFLSDFAMDKIFNGQLEKLVDPNLRFESDNWISETVSAVAELAFGCLQPQRNMRPTMSEVLNTLENIKSGSSQKALKWGSNHCYNATKVHIVSRLPDDYFEKK 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03115 422 SMART serkin_6 106 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03115 422 Pfam Protein kinase domain 107 381 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03115 422 PANTHER WALL-ASSOCIATED KINASE-LIKE PROTEIN 81 393 - -
Tsu03g03115 422 ProSiteProfiles Protein kinase domain profile. 106 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu03g03115 422 SUPERFAMILY Protein kinase-like (PK-like) 85 384 IPR011009 -
Tsu03g03115 422 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 81 393 IPR044652 -
Tsu03g03115 422 ProSitePatterns Serine/Threonine protein kinases active-site signature. 233 245 IPR008271 GO:0004672|GO:0006468
Tsu03g03115 422 Gene3D Transferase(Phosphotransferase) domain 1 195 407 - -
Tsu03g03115 422 Gene3D Phosphorylase Kinase; domain 1 76 194 - -
Tsu03g03115 422 ProSitePatterns Protein kinases ATP-binding region signature. 112 134 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03115 Tsu-Chr3 42997519 43001069 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03115 93 388 Receptor kinase-like Gene Family AT1G25390 51.645 6.23e-103 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tsu03g03115 Pkinase 2.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03115 - - mtr:MTR_6g082700 707.212