Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03105 aTGCCTGTTATCACGGGACACATGAAATGGAGAAGACCCAGAAACAAATTAAGACACCCCAATTCTGAAACTGATAAAAGTTCAGAACTTTCTTCTATAATCCAATCCACTTCTTGCAAATCCACAATCACCACTCTCTTTTCCAATTTCTCCAACAACACATCCAATGAAACCACACATGACAGTAACCGAAACAGAACAcaaaagaacaacaacaaaaacattaaCAATGGTAACTTTTCTGCAGCAACCTTCAGAGGACTCGGTTGCACAGCCGGTACATCGCAACAGGTGTCAGTACCAGCTGTGATTCGATCCTCTGAAGATTGGCAAGggaaaaagaatagaaaaaagaaacatagaAAGAAAAGTAACAAAACATGTCATGGTGTTGATGATGTGGATTTTCAGGATGTATGGTGTGGACCAGGAATTGGGTTTTCATCTGATGCTACTGCTGATGTTTCTGCGGATTGTGTTGTGGCAAGAAAGAATGTTTCTTCAAGAGGAAAATTTGATACTGGGGAAAGAGTAACACATAGAGAgCGTTCATCTTATTTTGGAAGGAGaaatttaaatcaagaaagTTTATCATTTTTGGATGATGATTCTGATGTTTTCACATCACGTCATGGATTAGAATCTTTTGGCAATGATAGATTCTTTAGAAATTCTTCACATGTTTCTTCTGATGGTCTTGCTGAGaaaatgataATTCAAGGAGCAAGAAGATTAATGGGGGGAAGATTAAATTCACGTGACCAATTTAGAGATTGGAGACTTGATGTTGATAATATGTCATATGAGCAATTGCTTGAGCTAGGTGAAAGAATTGGTTATGTGAAAACAGGACTTaaagaagatgaaatgaaaCACAACATAAAGAAAATGAAGCTTTTGATTTCAAATGATACACCAAAGCATCAAATAGACAAAAAGTGCACCATTTGTCAAGAGGAGTATGAAATAGATGATGAATTGGGGAGATTAAAGTGTGAACATTGCTATCATTTTCAGTGTATAAAACAATGGCTCGTGCTTAAAAATTTCTGTCCAGTATGTAAGCAAGAAGTCGTGGTTCGACACTGA 1089 0.3462 MPVITGHMKWRRPRNKLRHPNSETDKSSELSSIIQSTSCKSTITTLFSNFSNNTSNETTHDSNRNRTQKNNNKNINNGNFSAATFRGLGCTAGTSQQVSVPAVIRSSEDWQGKKNRKKKHRKKSNKTCHGVDDVDFQDVWCGPGIGFSSDATADVSADCVVARKNVSSRGKFDTGERVTHRERSSYFGRRNLNQESLSFLDDDSDVFTSRHGLESFGNDRFFRNSSHVSSDGLAEKMIIQGARRLMGGRLNSRDQFRDWRLDVDNMSYEQLLELGERIGYVKTGLKEDEMKHNIKKMKLLISNDTPKHQIDKKCTICQEEYEIDDELGRLKCEHCYHFQCIKQWLVLKNFCPVCKQEVVVRH 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03105 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 360 IPR013083 -
Tsu03g03105 362 MobiDBLite consensus disorder prediction 1 30 - -
Tsu03g03105 362 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 362 IPR045191 GO:0061630
Tsu03g03105 362 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 4 362 - -
Tsu03g03105 362 MobiDBLite consensus disorder prediction 50 78 - -
Tsu03g03105 362 SMART ring_2 314 354 IPR001841 -
Tsu03g03105 362 Pfam Ring finger domain 313 355 IPR001841 -
Tsu03g03105 362 MobiDBLite consensus disorder prediction 104 127 - -
Tsu03g03105 362 ProSiteProfiles Zinc finger RING-type profile. 314 355 IPR001841 -
Tsu03g03105 362 SUPERFAMILY RING/U-box 313 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03105 Tsu-Chr3 42820407 42825681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03105 4 269 C3H Transcription Factor Family AT1G73760 39.590 2.63e-42 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03105 - - gmx:100818517 457.603
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g00074 02 460644 464071 Tsu03g03105 03 42820407 42825681 ECH
Tsu03g03105 03 42820407 42825681 Tsu03g03105 03 42820407 42825681 ECH