Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03072 ATGCTCAAAAGCATTTGCATGGAAATGTTCTCGCAGCAGGATTACCACTTGGATGTAAAGACTGCTAAAAGATCTATACTTGTTGGTTTTCGAAAAACTGACGAGTCTCTGCTTCGAGAAAGTGCTGAAGGGGGATGGCAGGACGGTGCTACAGCTGTATGTGTCTGGGTATTGGGGCAAAAAGTTTTTGTCGCAAATATAGGAGATGCCAAAGCAGTTTTAGCCCGGGCAACTTTATCTGATGGATCCCAAGATAACTCAGATAGAGTACCTGCTCTCAAGGCCATTGTTTTGACAAGAGAACACAAACCTATATTCCCACAGGAGCGAGCACGCATTCAGAAGGCTGGTGGTGTTGTGAGCTCAAATGGACGATTACAAGGGCGTCTAGAAGTATCTAGGGCTTTCGGAGATCGCCAGTTCAAAAAGGTGGGACTTGTTGCAACCCCGGATATCCATTCTTTTGACCTAACTGATAAAGATCATTTCATCATTCTTGGTTGTGATGGATTGTGGGGGGTATTTGGACCCAGTGACGCTGTTGAGTTTGTTCAGAAGTTATTGAATGAGGGACTACCTGTAACAACTGTGAGCCGCCGTCTTGTAAGGGAAGCTGTTCGTGAGCGTCGCTGCAAAGATAACTGCACTGCAATTATCATTGCATTCAAGCGTAATTAA 678 0.4499 MLKSICMEMFSQQDYHLDVKTAKRSILVGFRKTDESLLRESAEGGWQDGATAVCVWVLGQKVFVANIGDAKAVLARATLSDGSQDNSDRVPALKAIVLTREHKPIFPQERARIQKAGGVVSSNGRLQGRLEVSRAFGDRQFKKVGLVATPDIHSFDLTDKDHFIILGCDGLWGVFGPSDAVEFVQKLLNEGLPVTTVSRRLVREAVRERRCKDNCTAIIIAFKRN 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03072 225 ProSiteProfiles PPM-type phosphatase domain profile. 1 222 IPR001932 -
Tsu03g03072 225 Gene3D - 2 225 IPR036457 -
Tsu03g03072 225 PANTHER PROTEIN PHOSPHATASE 2C 9 219 IPR015655 GO:0004722|GO:0006470
Tsu03g03072 225 Pfam Protein phosphatase 2C 19 210 IPR001932 -
Tsu03g03072 225 SMART PP2C_4 2 220 IPR001932 -
Tsu03g03072 225 PANTHER INTEGRIN-LINKED KINASE-ASSOCIATED SERINE/THREONINE PHOSPHATASE 2C 9 219 - -
Tsu03g03072 225 SUPERFAMILY PP2C-like 12 223 IPR036457 -
Tsu03g03072 225 CDD PP2Cc 29 222 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03072 Tsu-Chr3 42251184 42257301 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03072 17 174 PP2C-type Phosphatase Gene Family AT1G18030 72.152 6.96e-81 242
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03072 K17500 - pop:7453894 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03072 03 42251184 42257301 Tsu03g03072 03 42251184 42257301 ECH