Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03056 ATGGTTGTTGATCCTTCAATTCCTCAAACATCTAAACGAAGAAGAATCACCAACGTTTATTCCATGGCAACAATTGAAGAGATGCATGAAAAATTTGGGCGAGAGATTCGTGTTTTTGAGACATTATCACTTTCTGCATCACCAAATGCTGCAGAAAACAAAGAAGAGGAGCCTGAAGAGTTCTACGAGTTCACAGCTGAAGATTATTACAAAATTTTGGCTACTAAAAAGGATGATAAATTTCTGAAGACTCGAAAACTCCGAGAAGCTGATGCGGCGGCTCGTAGGTCAAGAATGACCAAGGCTGTAATTAGAGTTCGCTTCCCTGATAATCACACATTGGAAGCTACGTTTCAACCTTCAGACACCATCCAGAATTTAATTGATCTCCTCAACAAAGTGATTGCGCAACCAGAAAAGCCATTTTACTTATtTACTACTCCGCCGAAGAAGCTGATCAGAGATGTATCTCAGGATTTCTATGCTGCTGGATTTTGTCCTGGAGCCATTGTGTACTTTTCATATGATGTTTCAAATGGTGATGGAAGCGATGACGGCCCTTACCTACTAGAAGAGGTGTTGTCTTTGAAGAGTGCTAATGATCAAGGTCAGCCGTCTGAGCCATTACAGTCCGCACCAGTGTCTGCTGAGCCTGTCGTGCAAGCTCCTACTGTTGCAGAACGAAAACCGGCTGAGAAAAAGATTGTTAAGCCAAAATGGTTGAAAATGTAA 732 0.418 MVVDPSIPQTSKRRRITNVYSMATIEEMHEKFGREIRVFETLSLSASPNAAENKEEEPEEFYEFTAEDYYKILATKKDDKFLKTRKLREADAAARRSRMTKAVIRVRFPDNHTLEATFQPSDTIQNLIDLLNKVIAQPEKPFYLFTTPPKKLIRDVSQDFYAAGFCPGAIVYFSYDVSNGDGSDDGPYLLEEVLSLKSANDQGQPSEPLQSAPVSAEPVVQAPTVAERKPAEKKIVKPKWLKM 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03056 243 CDD UBX2_UBXN9 102 175 - -
Tsu03g03056 243 MobiDBLite consensus disorder prediction 199 231 - -
Tsu03g03056 243 Pfam UBX domain 100 156 IPR001012 GO:0005515
Tsu03g03056 243 SUPERFAMILY Ubiquitin-like 79 173 IPR029071 -
Tsu03g03056 243 ProSiteProfiles UBX domain profile. 97 173 IPR001012 GO:0005515
Tsu03g03056 243 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1-RELATED 10 243 - -
Tsu03g03056 243 PANTHER PLANT UBX DOMAIN-CONTAINING PROTEIN 1 10 243 IPR044232 GO:0032984|GO:0051117
Tsu03g03056 243 Gene3D - 36 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03056 Tsu-Chr3 41998424 42002662 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03056 30 120 C2H2 Transcription Factor Family AT2G01650 36.842 1.97e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03056 K15627 - gmx:100818386 303.523