Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03038 ATGGCTACTAGAATTGATTTGTTGAGCGACGTCGTCCCCGGAAGGACGGCTTGGCgttttagggttagggttgCTAGGCTCTGGGAAGTTACCGGTTATCTCAGATCTGATCAGGTTGTGTCTGTTGAGATGGTTCTTGTGGATTCTAAgGGTGTGAGGATCCATGCTACTGTTCGGAAACAGCTCCTGTATTTGTTTCAGCGAAAGTTGGATGAAGGGGTTGTTTACAACATGAGTTTCTTTACTGTTCTTCCCAGTACTGGGGTGTATCGCAGTACGCTCCATCCCTATAAGCTTGTTTTTCAGATGAAGACTAGGCTGGAGTTGGCTGAGGGTCCGGAGATTTCACGTTACGGATTTTCTTTGACCACTATTGCTGAAGTTTGCGCTAAACCTCCTGATTATGACTATCTAATTGATGAGGTGTCAATCCAGAATGTTATAAATACCACTAGGGTGTTGGTGGAACCTAAGATTGCTGAGGCTATCTCTTTTAGGGATgaTCTTGCCGTCCATGGTGTTGAGGCAAACATTCGTGTTAATGTTCTTGGTCCTCGTGTGAGGCCTTCTATGGAAGAAGATTTCCTTCATACCTATCATGTTATGTCTGTCTCTGGTTTGAATTCCTTGGTTGAAGATGGAACTTTTGTGGTTTGTGCTACCGTTGTTGGTCTGGTGGATGATGAAGATTGGTGGTATCCTGCTTGCAAGTGTCACAAGAGTGTCACTCCTGATTCTGGTGCTTATTACTGTGGCAGATGTGTTAAGCATGTTTTCCAGATGATACCTAGGTATAGGGTTAAGCTCCGTGTCACTGACGGCACTGGAGATGCTGTTTTCGTTGTATTTGATGGTGATATGCAGTATTTGCTTGGAGAGCAGTGTGCTACTTTGGTTTCTAATGCGAGTGCTGATAGTGTTGGTGCTTATCCTGCTGAAGTTCTGCGTTTGGAGGGTTCGAAATTGCTGTTTAAAGTTGCTAGAGTTAATTCTGCTGGTCTTTTGTCTGATTGTTCTTTCAGAGTTAAGCGTGTATGCTCTGATCCTGATATTCTGAAATGCTTTGATGCTCTTGGTTCTAAGGATGTTGTGTCTGCGGTTGTTGTCGAGCCTGATTCTATGTGTGAGGATCAGCTCTCTGGTGGTTACCCTTCTCTTAGTGAGTCTGGAGTTGATGAGTTTGTTTCTGGTCTCCTTGTTTCTCCTGCCGAGTCTTCTGCTGATCAAGTTGGACTAAGTGGTCCTGTCTCACTTGATAAGaCTCCTGTTCGATCTTCAACTGTGGGAGTTGGCGccgatgatgttgatgatgttaCTCCTATTTCTGTGTTGGTCCCCAAATTGGTTGTCAAATCTTCCAGGAAATCTAAGAGGGACTTGACTACTGCTTTTGTTGAATCTGTGGAGTCTGGATGTGGTTCTTCCTCTAAGGCTAATAGGGTTGAGTGA 1449 0.4327 MATRIDLLSDVVPGRTAWRFRVRVARLWEVTGYLRSDQVVSVEMVLVDSKGVRIHATVRKQLLYLFQRKLDEGVVYNMSFFTVLPSTGVYRSTLHPYKLVFQMKTRLELAEGPEISRYGFSLTTIAEVCAKPPDYDYLIDEVSIQNVINTTRVLVEPKIAEAISFRDDLAVHGVEANIRVNVLGPRVRPSMEEDFLHTYHVMSVSGLNSLVEDGTFVVCATVVGLVDDEDWWYPACKCHKSVTPDSGAYYCGRCVKHVFQMIPRYRVKLRVTDGTGDAVFVVFDGDMQYLLGEQCATLVSNASADSVGAYPAEVLRLEGSKLLFKVARVNSAGLLSDCSFRVKRVCSDPDILKCFDALGSKDVVSAVVVEPDSMCEDQLSGGYPSLSESGVDEFVSGLLVSPAESSADQVGLSGPVSLDKTPVRSSTVGVGADDVDDVTPISVLVPKLVVKSSRKSKRDLTTAFVESVESGCGSSSKANRVE 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03038 482 Gene3D - 4 108 IPR012340 -
Tsu03g03038 482 Pfam Domain of unknown function DUF223 43 115 IPR003871 -
Tsu03g03038 482 Gene3D - 190 345 IPR012340 -
Tsu03g03038 482 CDD RPA1_DBD_C 216 326 IPR013955 -
Tsu03g03038 482 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 22 142 - -
Tsu03g03038 482 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 142 295 - -
Tsu03g03038 482 Pfam Replication factor-A C terminal domain 219 305 IPR013955 -
Tsu03g03038 482 SUPERFAMILY Nucleic acid-binding proteins 212 326 IPR012340 -
Tsu03g03038 482 SUPERFAMILY Nucleic acid-binding proteins 6 111 IPR012340 -
Tsu03g03038 482 PANTHER REPLICATION FACTOR A 1, RFA1 22 142 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu03g03038 482 PANTHER REPLICATION FACTOR A 1, RFA1 142 295 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu03g03038 482 CDD RPA1_DBD_A_like 21 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03038 Tsu-Chr3 41675558 41678097 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03038 147 292 Core DNA Replication Machinery Family AT5G08020 26.115 3.97e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03038 - - mtr:MTR_6g051890 276.174