Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03023 ATGCTTTTTGGCGTTCAACTCACTGAAggaaccaacaacaacaacaccaacctATCTCAATATCAACAACTTCCACCTCAAGTTTCGACCTCCAATGGTGCCAGTAAGGTCTCCGACAATGTCGTCCATGCCTCCGATGGAGAACAAAAAAGCACCATTCTTTTTGGCGTTCAACTCACCGGAggaaccaacaacaacaacaactactcTGAATACCATCAACCTCCACCTCAAGTTTCGACCTCCAATGATACTATTAAAGTTTCCGACAATGTCGTTCATGCCTCCACGAGATCCCACAAATGCAAACAAGttaatGAAGGAATTTGGTCGGAGGAAGAACACAAGATGTTTTTGAAAGGGTTGAAACGTTTTGGTAAAGGTAAGTGGACAAAAATTTCTACAGATTTTGTCAAAACTCGTACACCAACCCAAATTGCAAGTCATGCTCAAAAGCATTTCCTCCTCAGTCAGAACCAGAATCGCCGCCGCAACAGAAAAGCTAGTGTCTTTGATCTTACTATCGATACGGAGGTGGAATCTTCAACTATTATGGAATATAAGCAAATTCAGCAAGAAACTATGGTGCCCCTACCTCCACTAACCCCCACTGCATATCCATCCACACATAATGCCGGCAGTTCCACCGGCATCCCTTTACCGATCGGTCTTGATCCAATACCATTGTCGGTGTGGCCACTTTCTTGGGTTGACTTGAATGACAATGGATTTTCTTCCACTGAGACTTTTCCATTTTCATTGAAGCTACAATCTTTGCCTCCATCTGACGACCACTCACAGGAAATTAGCGGCCAGTCGTCACCATTGATTTCATCGTCGAATTTTAAGTCTAGTGATGAGGGTGAAGTCTAG 873 0.4101 MLFGVQLTEGTNNNNTNLSQYQQLPPQVSTSNGASKVSDNVVHASDGEQKSTILFGVQLTGGTNNNNNYSEYHQPPPQVSTSNDTIKVSDNVVHASTRSHKCKQVNEGIWSEEEHKMFLKGLKRFGKGKWTKISTDFVKTRTPTQIASHAQKHFLLSQNQNRRRNRKASVFDLTIDTEVESSTIMEYKQIQQETMVPLPPLTPTAYPSTHNAGSSTGIPLPIGLDPIPLSVWPLSWVDLNDNGFSSTETFPFSLKLQSLPPSDDHSQEISGQSSPLISSSNFKSSDEGEV 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03023 290 SUPERFAMILY Homeodomain-like 106 158 IPR009057 -
Tsu03g03023 290 PANTHER TRANSCRIPTION FACTOR KUA1 47 284 - -
Tsu03g03023 290 SMART sant 106 156 IPR001005 -
Tsu03g03023 290 MobiDBLite consensus disorder prediction 257 290 - -
Tsu03g03023 290 CDD SANT 110 154 IPR001005 -
Tsu03g03023 290 ProSiteProfiles SANT domain profile. 110 158 IPR017884 -
Tsu03g03023 290 ProSiteProfiles Myb-like domain profile. 102 154 IPR001005 -
Tsu03g03023 290 Pfam Myb-like DNA-binding domain 109 153 IPR001005 -
Tsu03g03023 290 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 110 158 IPR017930 -
Tsu03g03023 290 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 109 155 IPR006447 GO:0003677
Tsu03g03023 290 Gene3D - 110 156 - -
Tsu03g03023 290 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 47 284 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03023 Tsu-Chr3 41489866 41492280 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Tsu03g03023 Myb_DNA-binding 5.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03023 - - mtr:MTR_5g037080 219.935