Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu03g03012 ATGAGGGAAGACTCAAGTTTTGTAATGGAAAATACATCAATGAATGGAAACATGGAGGAAGAAGAATTTGAAGGAATTGAAGAAAGAGATCCAGAAAGAAATCCAATGAATGAACCTCttctaaagagaaatagaaCACTTTCTTCAAATCCACTTGCTCTTGTTGGAGCAAAAGTTTCCTACATAGAAAGCTTAGATTATGAGATCAATGAGAATGATTTGTTCAAGCAAGATTGGAGAAGTAGATCAAGATGTCAAGTTTTACAATACATATTCTTGAAATGGTTACTTGCATTCCTTGTTGGACTTCTTACTGGAATTATAGCAACTCTTATCAATCTTGCTGTTGAGAATATTTCAGGGTATAAGCTCCTAGCTGTTGTTGAATACATCCAACAAGAAAGGTACTTGATAGGATTTCTATATTTCACAAGCACAAATTTCATTTTGACATTCATAGCTTcaattttgtgtgtttgttttgcTCCAACTGCTGCTGGACCAGGAATACCTGAAATCAAAGCTTATCTTAATGGTGTTGATACCCCAAACATGTATGGTGCTAACACTTTGTTTGTTAAgATAATTGGAAGCATAGGAGCTGTCTCAGCTGGTCTAGATTTAGGAAAAGAAGGTCCATTGGTACACATTGGAAGTTGCATTGCATCCTTACTAGGCCAAGGAGGTCCAGACAATCATAAAATCAAATGGAAATGGCTAAGATACTTCAACAACGACCGTGACCGTCGCGACCTAATCACGTGCGGAGCTTCTTCGGGAGTTTGCGCTGCCTTTCGAGCACCGGTTGGTGGTGTTCTGTTTGCTCTTGAAGAGGTGGCAAGTTGGTGGAGAAGTGCTCTACTTTGGAGAACTTTTTGTAGCACAGCTGTTGTTGTGGTTGTTCTAAGAGCATTCATTGAACTTTGTCATGAAGGAAAATGTGGTCTTTTTGGTGAAGGTGGTTTGATTATGTTTGATGTTAGTAATGTTGCTGTGAGTTATAATGTTATGGATATTATCCCTGTTGCTATTATTGGAATCCTTGGTGGTGTTTTGGGAAGCCTTTATAACTATCTTCTCCATAAGATCCTTAGGGTTTATAATCTCATCAATCAGAAAGGAAAAATATACAAACTCCTTCTAAGTCTCTCAGTATCAATCTTCACATCAGCATGTCAATATGGTCTACCATTTCTAGTAAAATGCACACCTTGTGAATCCTCATCACTTCAAGAACAATCTTCATCATGTCCTACAAATGGAAAATCAGGAAACTACAAACAATTCAACTGTCCAAATGGCCATTACAATGACCTTGCTACCCTTCTACTCACAACAAATGATGATGCAGTTagaaacattttctcaacaaatacaCCTCATGAATACCAACCTTATTCAATCCTAATTTTCTTCACACTTTATTGCATATTAGGTTTAATCACTTTTGGAATTGCTGTTCCATCAGGACTTTTTTTACCTATTATATTAATCGGTTCAGGCTATGGTCGCCTCCTCGGAATCATAATGAAACCTTACACAAACATTGATCATGGTTTGTTAGCTGTTCTTGGTGCAGCTTCCTTGATGGCAGGATCAATGAGAATGACTGTGTCACTTTGTGTTATATTTCTTGAATTAACcaacaatcttcttttgctACCGATAACGATGATTGTTCTTCTCGTAGCGAAAACCGTTGGAGATAGTTTCAATCCAAGTATTTATGAGATTATACTTCATTTGAAAGGGTTACCTTTTATGGATGCTGATCCCGAACTGTGGATGAGAAATTTATCAGTCGGAGAACTAATCGATGTGAAACCATCGGTTATTAGTTTTCGCGGAGTTGAAAAGGTTGCTAACATTGTTGAGGCTTTGAAGAATACTACACATAATGGTTTTCctgtgatggatgatgatgttgaATTTGAGATAGTAAAACTGCATGGAGTGATTCTAAGAGCACATTTGATAAAagtgcttaaaaaaaagtggtTTTTGAAAGAGAAAAGGAGAACTGAGGAATGGGAAGTGAGGGAGAAATTTTCTTGGGTTGAGTTAGCTGAAAGAGAAGGGAATATTGAAGATGTTGGTGTTACAAAAGATGAAATGGAAATGTTTGTTGATCTTCATCCTCTTACTAATACAACTCCTTTTACCGTGTTAGAGAGTATGTCTGTAGCAAAAGCCAAAATCCTTTTCAGACATGTTGGACTTCGTCATATGCTTGTTGTACCGAAGTATCAAGTGACCGGGGTATGTCCTGTAATTGGGATCTTGACAAGGCAGGATCTACTTGCATACAACATTCTATCAGTCTTTCCTCACTTGGCAAAATCTAAGGGAAGGGAAAAGAGGAATTGA 2367 0.3578 MREDSSFVMENTSMNGNMEEEEFEGIEERDPERNPMNEPLLKRNRTLSSNPLALVGAKVSYIESLDYEINENDLFKQDWRSRSRCQVLQYIFLKWLLAFLVGLLTGIIATLINLAVENISGYKLLAVVEYIQQERYLIGFLYFTSTNFILTFIASILCVCFAPTAAGPGIPEIKAYLNGVDTPNMYGANTLFVKIIGSIGAVSAGLDLGKEGPLVHIGSCIASLLGQGGPDNHKIKWKWLRYFNNDRDRRDLITCGASSGVCAAFRAPVGGVLFALEEVASWWRSALLWRTFCSTAVVVVVLRAFIELCHEGKCGLFGEGGLIMFDVSNVAVSYNVMDIIPVAIIGILGGVLGSLYNYLLHKILRVYNLINQKGKIYKLLLSLSVSIFTSACQYGLPFLVKCTPCESSSLQEQSSSCPTNGKSGNYKQFNCPNGHYNDLATLLLTTNDDAVRNIFSTNTPHEYQPYSILIFFTLYCILGLITFGIAVPSGLFLPIILIGSGYGRLLGIIMKPYTNIDHGLLAVLGAASLMAGSMRMTVSLCVIFLELTNNLLLLPITMIVLLVAKTVGDSFNPSIYEIILHLKGLPFMDADPELWMRNLSVGELIDVKPSVISFRGVEKVANIVEALKNTTHNGFPVMDDDVEFEIVKLHGVILRAHLIKVLKKKWFLKEKRRTEEWEVREKFSWVELAEREGNIEDVGVTKDEMEMFVDLHPLTNTTPFTVLESMSVAKAKILFRHVGLRHMLVVPKYQVTGVCPVIGILTRQDLLAYNILSVFPHLAKSKGREKRN 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu03g03012 788 PANTHER CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER 1 783 - -
Tsu03g03012 788 SMART cbs_1 610 663 IPR000644 -
Tsu03g03012 788 SMART cbs_1 718 771 IPR000644 -
Tsu03g03012 788 PRINTS Plant CLC chloride channel signature 439 455 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu03g03012 788 PRINTS Plant CLC chloride channel signature 293 303 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu03g03012 788 PRINTS Plant CLC chloride channel signature 68 76 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu03g03012 788 PRINTS Plant CLC chloride channel signature 279 287 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu03g03012 788 PRINTS Plant CLC chloride channel signature 311 318 IPR002251 GO:0005247|GO:0006821|GO:0016020
Tsu03g03012 788 Gene3D Clc chloride channel 86 590 - -
Tsu03g03012 788 CDD CBS_pair_voltage-gated_CLC_euk_bac 608 769 - -
Tsu03g03012 788 PRINTS Chloride channel signature 194 213 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu03g03012 788 PRINTS Chloride channel signature 258 277 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu03g03012 788 PRINTS Chloride channel signature 163 180 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu03g03012 788 PRINTS Chloride channel signature 519 535 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu03g03012 788 PRINTS Chloride channel signature 575 589 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu03g03012 788 PRINTS Chloride channel signature 487 507 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu03g03012 788 PRINTS Chloride channel signature 537 556 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu03g03012 788 ProSiteProfiles CBS domain profile. 715 781 IPR000644 -
Tsu03g03012 788 Pfam Voltage gated chloride channel 151 568 IPR001807 GO:0005247|GO:0006821|GO:0016020|GO:0055085
Tsu03g03012 788 SUPERFAMILY Clc chloride channel 72 590 IPR014743 -
Tsu03g03012 788 Pfam CBS domain 717 769 IPR000644 -
Tsu03g03012 788 CDD ClC_6_like 63 588 - -
Tsu03g03012 788 SUPERFAMILY CBS-domain pair 594 769 IPR046342 -
Tsu03g03012 788 MobiDBLite consensus disorder prediction 1 39 - -
Tsu03g03012 788 Gene3D - 616 759 IPR046342 -
Tsu03g03012 788 PANTHER CHLORIDE CHANNEL PROTEIN 1 783 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu03g03012 Tsu-Chr3 41323057 41328992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu03g03012 1 783 Ion Channels AT3G27170 73.638 0.0 1191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu03g03012 K05016 - gmx:778094 1311.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu03g03012 03 41323057 41328992 Tsu03g03012 03 41323057 41328992 ECH
Tsu04g00603 04 5625045 5629034 Tsu03g03012 03 41323057 41328992 PCT